Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca03g00379 ATGGCGGAGAAGTTGGCTGCAGAAGAGAGCTTCAACTCGAAGACTCTTCGCCAAACGACCACGAAGCTTGTCGTTTTGGCCGACCTCAACGTCGATCCTCCCGAAGCCGACGACGACGATTCCTCACTCCTCCCTCCGCCGCCGCCAGTTACCGCTTTGGCAAATGAAGAAAACAGTCAAGATAAGAGTTTGTTATCCAAAGAGACTGATAGCAATGAAGGTGAAAGTAAAAAGTTAAACAAGCTGGGTAAATGCCGCTCCAGACTTAGCAAGACAGATTCTTCTCTTGATTGTGGAGCTGATGCAGATGGTGATCAACATGTTCAAGGGCCTCCTTCATATCGGGAGGAAAAAGTTAGCAGTGTGAAGACTGGCTTGGTTCATGTTGCAAGGAAGATGCCCAAAAATGCTCATGCTCATTTTATACTTGGCTTGATGTACCAAAGATTAAGCCAACCTCAAAAGGCTGTGGCGGCTTATGAGAAGGCAGAAGAGATTTTGCTCAGGTCTGAAGCTGAGATTGATAGGCCAGAGTTGCTGTCCTTAGTTCAGATTCACCATGCACAGTGCCTGATACTAGAAAGTTCATCAGAAAATAGTTCAGATAAAGAACTTCAACCTCATGAACTTGAAGAGATTCTTTCTAAGCTGAAAGAGTCAGTGCAGTCAGATATCAGACAGACAGCTGTATGGAACACACTGGGTTTTATCCTTCTTAAAACTGGTCGTGTGCAGAGTGCTATCTCAGTTTTGTCATCATTGTTGGCCATAGCCCCAGAGAACTATGATTGCCTAGGAAATCTTGGGATAGCTTATCTTCAAATTGGGAATTTGGAGTTATCTGCAAAATGTTTTCAAGAATTGATTCTAAAAGATCAAAACCATCCTGCAGCTTTGGTCAATTATGCTGCCCTTCTTTTGTGGAAATATGCTTCGGTTGTGGCAGGTCCTGGTGCAAGTGCTGCTGATGGGGGCATGGCTGATCAGATTATGGCTGCTAATGTTGCTAAGGAATGTTTGTTGGCTGCAATTAAAGCGGATAGCAAATCAGCCCATGTTTGGGCAAATCTTGCCTATGCATTTTCTATTAGTGGTGATCATCGAAGTTCCAGCAAGTGCTTGGAGAAGGCAGCCAAACTGGAACCTAATTGCATGTCTACCCGATATGCTGTTGCTATCCATCGAATAAAGGAGGCAGAAAGATCTCAAGATCCTAGTGAACTGCTTTCATGTGCTGGAAATGAGATGGCTTCTATAATAAGAGATGGTGATTCATCCCTGATTGAGCTTCCAATAGCATGGGCCGGGCTTGCCATGGTTCACAAGGCTCAGCATGAGATAGCGGCAGCATATGAAAGTGAACAGCATGGGCTGAGAGAAGTTGAAGAACGTGCTGTTAGTAGTTTAAAGCAGGTAATTTATTGCTTTATTTTTTTAGTTATCATCCTAGGATAA 1455 0.4399 MAEKLAAEESFNSKTLRQTTTKLVVLADLNVDPPEADDDDSSLLPPPPPVTALANEENSQDKSLLSKETDSNEGESKKLNKLGKCRSRLSKTDSSLDCGADADGDQHVQGPPSYREEKVSSVKTGLVHVARKMPKNAHAHFILGLMYQRLSQPQKAVAAYEKAEEILLRSEAEIDRPELLSLVQIHHAQCLILESSSENSSDKELQPHELEEILSKLKESVQSDIRQTAVWNTLGFILLKTGRVQSAISVLSSLLAIAPENYDCLGNLGIAYLQIGNLELSAKCFQELILKDQNHPAALVNYAALLLWKYASVVAGPGASAADGGMADQIMAANVAKECLLAAIKADSKSAHVWANLAYAFSISGDHRSSSKCLEKAAKLEPNCMSTRYAVAIHRIKEAERSQDPSELLSCAGNEMASIIRDGDSSLIELPIAWAGLAMVHKAQHEIAAAYESEQHGLREVEERAVSSLKQVIYCFIFLVIILG 484
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca03g00379 484 Gene3D Tetratricopeptide repeat domain 113 170 IPR011990 GO:0005515
Cca03g00379 484 ProSiteProfiles TPR repeat profile. 351 384 IPR019734 GO:0005515
Cca03g00379 484 PANTHER TETRATRICOPEPTIDE REPEAT (TPR)-CONTAINING PROTEIN-RELATED 4 473 - -
Cca03g00379 484 MobiDBLite consensus disorder prediction 93 120 - -
Cca03g00379 484 ProSiteProfiles TPR repeat profile. 228 261 IPR019734 GO:0005515
Cca03g00379 484 Pfam Tetratricopeptide repeat 238 297 - -
Cca03g00379 484 PANTHER TETRATRICOPEPTIDE REPEAT (TPR)-CONTAINING PROTEIN 4 473 - -
Cca03g00379 484 MobiDBLite consensus disorder prediction 61 81 - -
Cca03g00379 484 SMART tpr_5 137 170 IPR019734 GO:0005515
Cca03g00379 484 SMART tpr_5 351 384 IPR019734 GO:0005515
Cca03g00379 484 SMART tpr_5 228 261 IPR019734 GO:0005515
Cca03g00379 484 SMART tpr_5 262 295 IPR019734 GO:0005515
Cca03g00379 484 SMART tpr_5 431 464 IPR019734 GO:0005515
Cca03g00379 484 SUPERFAMILY TPR-like 336 395 IPR011990 GO:0005515
Cca03g00379 484 SUPERFAMILY TPR-like 131 307 IPR011990 GO:0005515
Cca03g00379 484 Pfam Tetratricopeptide repeat 351 384 IPR019734 GO:0005515
Cca03g00379 484 Pfam Tetratricopeptide repeat 137 166 IPR019734 GO:0005515
Cca03g00379 484 MobiDBLite consensus disorder prediction 30 81 - -
Cca03g00379 484 Gene3D Tetratricopeptide repeat domain 181 465 IPR011990 GO:0005515
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca03g00379 - - gmx:100820184 748.043
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca03g00379 03 5877496 5883671 Cca03g00379 03 5877496 5883671 ECH