Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca03g00378 ATGGCAGCAACTAGCATCATCTCCATCTCCTCTGCTTCACTCTTTACTCCAACAACACCTCAACCCAAAACCCAATGCCTCCTCAAACACAAGGACCATGATCAACTTCCATCATCCTCCTTCACAGCACTTGCTTCTCTTAAGATATCAAGACCAACAACATCGTTTGGAGTCACTACAACCACAAGGCTTCCTCCTCGTAGGTTCACTTGTTCTGCATCCGCATCTTCCTCTTCCACTCTCCCCTCGGCTCTTCTATTTGACTGTGATGGAGTTCTTGTGGATACTGAGAAAGATGGCCATCGCATATCTTTCAACCAAACCTTCCAAGAGAGAGAACTAGGAGTTACCTGGGATGTAGACTTGTACGGGGAATTGCTCAAAATTGGAGGGGGAAAGGAAAGGATGACAGCATACTTTAACCAGACGGGTTGGCCTGCTAATGCCCCAACAGGTGAACAAGAAAGAAAAGAATTCATAGCTTCACTCCACAAACAAAAGACAGAACTATTTATGGCCCTAATTGAGAAAAAACTGTTGCCTCTTCGTCCAGGTGTTGCAAAGATTATCGATCAGGCTTTTGCTCAAGGAGTCCATGTTGCAGTTTGTAGCACATCCAATGAGAAGGCGGTCTCTGCAATAGTATCATTCTTGCTGGGACCTGAGCGAGCAGAAAAAATCAAGATATTTGCAGGAGATGTGGTTCCCCGTAAAAAGCCTGATCCAGCCATCTATCTATTAGCAGCAAGTACTCTGGGTGTTGAACCTTCAAGATGTGTTGTAGTGGAGGATAGTGCCATAGGCCTAGCAGCTGCTAAAGCAGCTGGAATGACTTGTATAGTAACAAAGAGCGGGTATACAGCAGATGAAGATTTCTTAAATGCAGATGCTGTGTTTGACTGCATTGGTGATCCTCCTGAGGAGAGATTTGATTTGGCATTCTGTGGAAGCCTTCTTGAGAAGCAATACGTGAGCTAG 978 0.4509 MAATSIISISSASLFTPTTPQPKTQCLLKHKDHDQLPSSSFTALASLKISRPTTSFGVTTTTRLPPRRFTCSASASSSSTLPSALLFDCDGVLVDTEKDGHRISFNQTFQERELGVTWDVDLYGELLKIGGGKERMTAYFNQTGWPANAPTGEQERKEFIASLHKQKTELFMALIEKKLLPLRPGVAKIIDQAFAQGVHVAVCSTSNEKAVSAIVSFLLGPERAEKIKIFAGDVVPRKKPDPAIYLLAASTLGVEPSRCVVVEDSAIGLAAAKAAGMTCIVTKSGYTADEDFLNADAVFDCIGDPPEERFDLAFCGSLLEKQYVS 325
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca03g00378 325 SFLD phosphoglycolate phosphatase 80 308 - -
Cca03g00378 325 SUPERFAMILY HAD-like 83 304 IPR036412 -
Cca03g00378 325 TIGRFAM HAD-SF-IA-v3: HAD hydrolase, family IA, variant 3 164 281 IPR006439 -
Cca03g00378 325 CDD HAD_CbbY-like 87 284 - -
Cca03g00378 325 Gene3D Putative phosphatase; domain 2 96 180 IPR023198 -
Cca03g00378 325 Pfam Haloacid dehalogenase-like hydrolase 85 281 IPR041492 -
Cca03g00378 325 Gene3D - 84 301 IPR023214 -
Cca03g00378 325 SFLD C1.5.6: HAD, Beta-PGM, Phosphatase Like 80 308 - -
Cca03g00378 325 PANTHER XYLULOSE-1,5-BISPHOSPHATE (XUBP) PHOSPHATASE 53 324 IPR044999 GO:0016787
Cca03g00378 325 PANTHER CBBY-LIKE PROTEIN 53 324 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca03g00378 Cca-Chr3 5871346 5876196 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca03g00378 - - pvu:PHAVU_009G169900g 561.992
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca03g00378 03 5871346 5876196 Cca03g00378 03 5871346 5876196 ECH