Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca03g00377 ATGAAACGGTTTTTCAAAGTAGTGGAGAAAGATTCAGATGGGTCTGCGAAGAAGCCACGAGAGAATGACGCTGTCGCTGAGGGTGGAGAGAATAAGAAGAAGGAACCCTTGAAGTTCATGACTTGGAATGCCAACAGCTTTCTGCTTCGAGTAAAAAACAATTGGCCAGACTTCACCAACCTCATCACCACTTTTGATCCTGATGTCATTGCCATACAGGAAGTGCGGATGCCTGCTGCTGGAGCCAAGGGTGCATCTAAAATTCAGGGAGAGATCAAAGATGATACAAGTGCCTCCAGGGAAGAAAAGAAGATATTGATGCGTGCACTTTCTGCTCCACCTTTTGGGAACTATAATGTTTGGTGGTCTCTTGCTGATTCAAAGTACGCAGGGACAGCGCTACTGGTTAAGAAATGCTTCAAGCCTAAAAGTGTTGTTTTCAATCTTGATAAAATAGCTTCAAAGCATGAACCAGATGGTCGAGTAATCCTAGCTGAATTCGAGACACTTCGTTTATTGAATACATATGTACCAAACAATGGATGGAAAGAGGAGGCTAATTCATTTCAAAGGAGAAGAAAATGGGACAAAAGGATTCTGGAATTTGTTACACAAAATTCAGACAAGCCTTTAATATGGTGTGGGGATCTGAATGTCAGCCATGAAGAGATCGATGTGAGTCATCCAGAGTTTTTCAGTACAGCAAAACTCAATGGTTATATTCCTCCAAATAAAGAGGATTGTGGGCAGCCTGGGTTTACCTTGTCTGAAAGAAAACGGTTTGGTACCATCTTAAGAGAGGGAAAGCTGATAGATGCCTACAGATTTCTAAACAAGGATAAGGATAAGGACATGGAGCGAGGTTTCTCATGGTCTGGAAACCCAGTTGGAAGGTATCGTGGAAAACGGATGAGAATAGACTATTTTTTAGTTTCAGAGAAACTTAAAGAAAGGATTGTTTCATGTGAAATGCTTGGACACGGGATAGAGTTAGAAGGTTTTTATGGAAGTGATCATTGTCCAGTTACCTTGGAGCTCTCTCCCAGTTCTATCCCCCAAAACGAGGATCCAGTATAA 1077 0.4188 MKRFFKVVEKDSDGSAKKPRENDAVAEGGENKKKEPLKFMTWNANSFLLRVKNNWPDFTNLITTFDPDVIAIQEVRMPAAGAKGASKIQGEIKDDTSASREEKKILMRALSAPPFGNYNVWWSLADSKYAGTALLVKKCFKPKSVVFNLDKIASKHEPDGRVILAEFETLRLLNTYVPNNGWKEEANSFQRRRKWDKRILEFVTQNSDKPLIWCGDLNVSHEEIDVSHPEFFSTAKLNGYIPPNKEDCGQPGFTLSERKRFGTILREGKLIDAYRFLNKDKDKDMERGFSWSGNPVGRYRGKRMRIDYFLVSEKLKERIVSCEMLGHGIELEGFYGSDHCPVTLELSPSSIPQNEDPV 358
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca03g00377 358 SUPERFAMILY DNase I-like 37 346 IPR036691 -
Cca03g00377 358 MobiDBLite consensus disorder prediction 1 30 - -
Cca03g00377 358 ProSiteProfiles AP endonucleases family 1 profile. 37 348 IPR004808 GO:0004518|GO:0006281
Cca03g00377 358 CDD Ape1-like_AP-endo 37 346 - -
Cca03g00377 358 Gene3D Endonuclease/exonuclease/phosphatase 5 348 IPR036691 -
Cca03g00377 358 TIGRFAM xth: exodeoxyribonuclease III (xth) 37 346 IPR004808 GO:0004518|GO:0006281
Cca03g00377 358 PANTHER AP ENDONUCLEASE 25 349 IPR004808 GO:0004518|GO:0006281
Cca03g00377 358 Pfam Endonuclease/Exonuclease/phosphatase family 40 339 IPR005135 GO:0003824
Cca03g00377 358 PANTHER DNA-(APURINIC OR APYRIMIDINIC SITE) LYASE 25 349 - -
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca03g00377 - - ccaj:109815445 724.161
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca03g00377 03 5861647 5868172 Cca03g00377 03 5861647 5868172 ECH