Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca03g00365 atGGGAAGAGATAATCTTTGTGCAAATATGAGAGGTGGGTGCGTTTCACGTTTCAGAAACTCGTGCTCTCAGATGGAGAAATCCCTCAACGACGCCGTTTCCAAGAGCTTCCTCGGGAGCTACTTCAAGTTGGAAGCAAGGAAGAGCTGTTTCACAAGGGAGCTTCGTGCTGCTGTTGCCACTTTCCTCACCATGGCTTACATCATCACCGTCAACGCCACCATCATCGCCGCCTCCGGCACCACCTGCTCCGCCGCCGACTGCTCCCCTCCGGCGGGCCCGGACTGCGTGGTGGGGCCCAACGTTGGGTATGAGAGCTGCCTCGCACGGGCCAAGAGCGACCTTGTTGTGGCCACCGCTGTTTCGGCTTTGATTGGGTCTGTTTCCATGGGCCTGCTGGCTAACCTCCCTTTGGGCCTGGCTCCAGGTATGGGGCCCAATGCTTACTTGGCTTTTAACATGGTTGGTTTTCACGGAACTGGGTCGGTTCCGTACCGAACTGCTTTGGCTGTGATTTGTGTTGAGGGGAGTCTCTTTCTTTTTATCTCTGCTGTTGGGCTGAGAGGGAAGCTTGCCAAGCTCATTCCGAATTCTGTTAGGCTTGGCTGTGCTGCTGGGATTGGGCTTTTCATCGCCTTCACGGGCCTGCAGGGTGGCCTCGGCGTTGGGCTTATTGGGCCTGATGCTTCCAATTTGGTCACCCTCACAGCCTGCAAGTATGTCAACCCTGAAACGGGGGCCTGCTTGGGTGGGAAGATGCAAAGCCCAAAATTCTGGCTGGGCTTGGTTGGCTTCCTCATCACATGTTATGGGCTTATGAAGAATATCAAGGGGAGCATGATTTATGGGATTCTCTTTGTGACATTGGTGTCATGGTTTAGACACACTGAGGTGACTTATTTTCCTAACACCCCACTTGGTGATGCAAATTTCAACTATTTCAAACAAGTGGTTGGTTTTCACAAGATTGAGTCCATTGCTGGGGCCCTTAGCTTCAAAGAGTTTAACAGAAAGGAAGTGTGGGTGGCTTTGGCTACTTTGTTCTATGTAGATGTGCTTGCCATCACTGGCACAATGTACACCATGGCTGAGATTGGTGGCTTTGTGGATGAAAAAGGACATTTTGAAGGTGAATATGTGGCATACATGGTTGATGCAGGTAGCACCATTGTGGGTTCTGCATTGGGTGTGTCAACCACTGCAACGTTTGTGGAATCTTCAGCTGGTTTGAGAGAGGGTGGTCGCACAGGGTTAACAGCGATTTTCATTGGGTTATTCTTCTTTTTGTCACTGTTTTTCACTCCTCTGTTGACTAGTGTTCCTCCTTGGGCTATAGGACCCTCCCtggtgatggttggggtgatgatgatgaaggtggtgaaggagatAGATTGGACCAACACAAAGGATGCAGTGCCTGCTTTTGCAACCATGATCCTCATGCCTCTCACTTATTCCATTGCAAATGGGATCATTGGTGGGATTGGACTCTACATTGCTCTTAGCCTCTATGACTATGCTGCAAGCATTATAAATTGGTTGAGGAAGACGAGAAGAGTGGTGGTCAAGGAACAAAACCAAGTTTCTGCTACAGCTGGTGCTGACTCAGCAGTGGAGATTATATGA 1626 0.4877 MGRDNLCANMRGGCVSRFRNSCSQMEKSLNDAVSKSFLGSYFKLEARKSCFTRELRAAVATFLTMAYIITVNATIIAASGTTCSAADCSPPAGPDCVVGPNVGYESCLARAKSDLVVATAVSALIGSVSMGLLANLPLGLAPGMGPNAYLAFNMVGFHGTGSVPYRTALAVICVEGSLFLFISAVGLRGKLAKLIPNSVRLGCAAGIGLFIAFTGLQGGLGVGLIGPDASNLVTLTACKYVNPETGACLGGKMQSPKFWLGLVGFLITCYGLMKNIKGSMIYGILFVTLVSWFRHTEVTYFPNTPLGDANFNYFKQVVGFHKIESIAGALSFKEFNRKEVWVALATLFYVDVLAITGTMYTMAEIGGFVDEKGHFEGEYVAYMVDAGSTIVGSALGVSTTATFVESSAGLREGGRTGLTAIFIGLFFFLSLFFTPLLTSVPPWAIGPSLVMVGVMMMKVVKEIDWTNTKDAVPAFATMILMPLTYSIANGIIGGIGLYIALSLYDYAASIINWLRKTRRVVVKEQNQVSATAGADSAVEII 541
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca03g00365 541 Pfam Permease family 109 490 IPR006043 GO:0016020|GO:0022857|GO:0055085
Cca03g00365 541 PANTHER ADENINE/GUANINE PERMEASE AZG2 15 541 IPR029950 GO:0005345|GO:0006863
Cca03g00365 541 PANTHER XANTHINE/URACIL PERMEASE C887.17-RELATED 15 541 IPR045018 GO:0015205
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca03g00365 Cca-Chr3 5623304 5625435 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca03g00365 K06901 - gmx:100808299 852.432
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca03g00365 03 5623304 5625435 Cca03g00365 03 5623304 5625435 ECH