Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca03g00363 ATGGCGGCTGCAGCGGTGGCGGAGGCGAGAAAGGTTCCTCGGCCGGGCAAGGGCGGGTTCGAGGCCCACGGTCTGAGCGAAGAGGAGGCGCGCGTCCGAGCCATCGCGGAGATCGTGAGCTCCATGGTGGACCTCTCCCACAGAGGCCAGAACGTGGACCTCAACGCGCTCAAGTCCGCCGCTTGCCGCAAGTACGGCCTCTCGCGCGCGcccaagctcgtcgagatgatcgccgcgctccccgacgccgagcgcgaagctctcctccccaagctccgcgccaagcccgtccggaccgcctctggaatcgccgtcgtcgccgtcatgtccaagccgcaccggtgtccgcacatcgccaccacggggaacatctgcgtttactgccccggggggcctgactccgacttcgagtacagcactcagtcttacaccggctacgaaccgaccagcatgcgcgcgattcgtgcgAGGTATAATCCTTATGTCCAAGCGAGGAGCAGGATAGATCAACTTAAGCGTTTGGGTCATAGTGTAGACAAGgttgagtttatcttaatgggtggtaccttcatgtcacttccagctgattaccgtgattactttataagaaatcttcatgatgctttgtctggacacacgtctgccaatgtggaagaggctgtagcttactctgagcatagtgcaaccaagtgtattggcatgacaattgaaacGAGGCCAGATTATTGTCTTGGGCCTCACTTGCGACAAATGCTTTCTTATGGTTGTACACGATTGGAGATTGGAGTCCAAAGCACCTATGAGGATGTTGCTCGTGACACAAATAGAGGACACACTGTAGCTGCTGTAGCCGACTGTTTTTGCTTGGCTAAAGATGCTGGTTTCAAGgttgttgctcatatgatgcctgatcttccaaatgttggtgttgaaagggacatggaaagtttccgggagttttttgagagtcccttgtttagagcagacgggcttaaaatatatcctacacttgtaattcgtggaactgggctttatgagctctggaaaactggCAGGTATAGAAATTATcctcccgagcaacttgtggacatcatagcaaggatccttgcaatggtacccccatggacacgtgtttatagagttcagcgggatattcccatgcctctggttacctctggtgttgagaaagggaatctgagggagctagcattagctcgaatggaagacctgggattgaaatgtcgtgatgttcggactagagaagctggaatccagGATATTCACCACCAGATTAGGCCAGAAGAGGTGgagcttgttcggcgtgattatatggcaaatgagggttgggaaacatttctgtcatatgaagatacaagacagGATATCCTTGTTGGTTTGTTGCGCCTGCGAAAATGTGGCCGTAACACTACTTGTCCAGAGCTTATGGGGAAGtgctctattgttcgtgaactccacgtttatggaactgctgtaccagttcatggacgtgatgctgacAAACTACAACACCAGggttatgATGCTCCCAGTCGCGCCATGCTGAAATCAACCTTCACTCCCATTTTCTGGGCACTCACCCCCAAACCCAAACCCAATTCCCCAAAACCCCTCTCTCACTCAATCACCACAAACAGCACGCCACTCGTTCGACACAACGCCTCTCTCAACCCCGCCACCGCATCACCCCCTTCCTCCGCCTACATCCACCTCCCTTTCTGCCGCAAACGCTGCCACTACTGCGACTTCCCCGTCGTCGCCCTTGGCTCCACCTCAACCCACCCCCACAACGACCCACGCGTCTCAAACTACATCCACTGGCTCTGCCGCGAAATCACCGCCACCAGAGCAGGCCCACCCCACACACCACTTCAAACGGTCTACTTCGGAGGCGGAACGCCCTCGCTGGTGCCTCCTAGGTTGGTTTCCTCGGTGTTGGAGACCCTCACGGCGAAGTTTGGGATCCGTGAGGATGCTGAAATATCCATGGAAATGGACCCGGGCACGTTTGACGCTGAGAAGATGCGGGAGATGGTGGTGTTGGGCGTGAACAGAGTGTCTCTGGGGGTTCAGGCGTTTCAGGAGGAGCTCTTGAGAGCGTGTGGGAGGGCCCATGGGGTGAAAGAGGTTCATGAGGCTATTGCTGTTGTTAAGTCATGTGGGGTTCGGAATTGGAGTGTTGATCTCATTGCTTCATTGCCTCATCAGACTCGTGACATGTGGGAGGAGACTCTCACCCTCACTGTTGAGGCGCAACCCACTCATGTTTCGGTTTATGACTTGCAGATTGAGCAAGGGACTAAATTTGGGCGCTTGTATTCACCGGGGGAATTCCCAATGCCTTCTGAAACGCAATCAGCTGAGTTCTACAAGATGGCTTCAAGAATGCTTGGTGATGCAAATTACAATCATTACGAAATCAGCAGCTACTGCAAGAGTGGATATGAGTGCAAACACAACTTAACGTATTGGAAGAACAAGCCTTTCTATGCCTTTGGCCTTGGCTCTGCTAGTTTCATTGGTGGGTTGAGGTTTTCAAGACCAAGGAAGGTGAATGATTACTTTAATTTTGTGCAGAATTTGGAAAATGGATTAGTAAATACCTCTGTTGATGGCCAAATTCATGGCAAGGACACAGCCATGGATGTGGTGATGCTGTCTTTAAGAACTTCACAAGGCCTAGACTTGAAGTGCTTCCAAGAATCATTTGGCAGCTCTGTTGTTTTATCTTTGCTTGAGGTTTATAAACCTTATGTTGAGAGTGGACTTGTGGTTTGCTTGGACGAGCATAGGAAAAGCATTAGAGTAGATGACCTTAATAATGCAGAAAGGAGGGTGGCTTATATAAGGCTAAGCGATCCTGAAGGTTTCCTCTTATCAAATGAGTTAATAGCCCTTGCTTTTGGGGTTATTGACTCTTGGAAGGATTTCCCTTCATACCAAGAAGCAGAAGCTACTTGA 2979 0.3468 MAAAAVAEARKVPRPGKGGFEAHGLSEEEARVRAIAEIVSSMVDLSHRGQNVDLNALKSAACRKYGLSRAPKLVEMIAALPDAEREALLPKLRAKPVRTASGIAVVAVMSKPHRCPHIATTGNICVYCPGGPDSDFEYSTQSYTGYEPTSMRAIRARYNPYVQARSRIDQLKRLGHSVDKVEFILMGGTFMSLPADYRDYFIRNLHDALSGHTSANVEEAVAYSEHSATKCIGMTIETRPDYCLGPHLRQMLSYGCTRLEIGVQSTYEDVARDTNRGHTVAAVADCFCLAKDAGFKVVAHMMPDLPNVGVERDMESFREFFESPLFRADGLKIYPTLVIRGTGLYELWKTGRYRNYPPEQLVDIIARILAMVPPWTRVYRVQRDIPMPLVTSGVEKGNLRELALARMEDLGLKCRDVRTREAGIQDIHHQIRPEEVELVRRDYMANEGWETFLSYEDTRQDILVGLLRLRKCGRNTTCPELMGKCSIVRELHVYGTAVPVHGRDADKLQHQGYDAPSRAMLKSTFTPIFWALTPKPKPNSPKPLSHSITTNSTPLVRHNASLNPATASPPSSAYIHLPFCRKRCHYCDFPVVALGSTSTHPHNDPRVSNYIHWLCREITATRAGPPHTPLQTVYFGGGTPSLVPPRLVSSVLETLTAKFGIREDAEISMEMDPGTFDAEKMREMVVLGVNRVSLGVQAFQEELLRACGRAHGVKEVHEAIAVVKSCGVRNWSVDLIASLPHQTRDMWEETLTLTVEAQPTHVSVYDLQIEQGTKFGRLYSPGEFPMPSETQSAEFYKMASRMLGDANYNHYEISSYCKSGYECKHNLTYWKNKPFYAFGLGSASFIGGLRFSRPRKVNDYFNFVQNLENGLVNTSVDGQIHGKDTAMDVVMLSLRTSQGLDLKCFQESFGSSVVLSLLEVYKPYVESGLVVCLDEHRKSIRVDDLNNAERRVAYIRLSDPEGFLLSNELIALAFGVIDSWKDFPSYQEAEAT 992
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca03g00363 992 PANTHER ELONGATOR COMPLEX PROTEIN 3 2 514 IPR034687 -
Cca03g00363 992 SMART MiaB 105 367 IPR006638 GO:0003824|GO:0051536
Cca03g00363 992 SMART MiaB 570 798 IPR006638 GO:0003824|GO:0051536
Cca03g00363 992 SFLD HemN-like, clustered with heat shock genes 570 936 IPR004559 GO:0004109|GO:0005737|GO:0006779|GO:0051539
Cca03g00363 992 Pfam Radical_SAM C-terminal domain 329 408 IPR032432 -
Cca03g00363 992 SUPERFAMILY Radical SAM enzymes 135 374 - -
Cca03g00363 992 Pfam Radical SAM superfamily 123 311 IPR007197 GO:0003824|GO:0051536
Cca03g00363 992 SUPERFAMILY Radical SAM enzymes 561 936 - -
Cca03g00363 992 CDD Radical_SAM 580 789 - -
Cca03g00363 992 SFLD ELP3-like 53 513 IPR034687 -
Cca03g00363 992 ProSiteProfiles Radical SAM core domain profile. 98 388 IPR007197 GO:0003824|GO:0051536
Cca03g00363 992 TIGRFAM hemN_rel: putative oxygen-independent coproporphyrinogen III oxidase 572 931 IPR004559 GO:0004109|GO:0005737|GO:0006779|GO:0051539
Cca03g00363 992 Pfam Radical SAM superfamily 575 752 IPR007197 GO:0003824|GO:0051536
Cca03g00363 992 CDD Radical_SAM 112 359 - -
Cca03g00363 992 PANTHER HISTONE ACETYLTRANSFERASE-RELATED 2 514 IPR039661 -
Cca03g00363 992 SFLD anaerobic coproporphyrinogen-III oxidase like 570 936 - -
Cca03g00363 992 Gene3D tm_1862 like domain 578 796 IPR023404 -
Cca03g00363 992 SFLD Radical SAM 53 513 IPR007197 GO:0003824|GO:0051536
Cca03g00363 992 ProSiteProfiles Radical SAM core domain profile. 565 806 IPR007197 GO:0003824|GO:0051536
Cca03g00363 992 TIGRFAM ELP3: radical SAM enzyme/protein acetyltransferase, ELP3 family 50 514 IPR034687 -
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca03g00363 K07739 - gmx:100818764 1019.99
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca03g00363 03 5585088 5593557 Cca03g00363 03 5585088 5593557 ECH