Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca03g00339 ATGGTTTCAACGAGACGCAACAGTGGATCTTTCTCCAACACCAACAAGAGGTCTTCTTCCTCCGAAGACAAGACTCCCTCACCTTCCCCTAAGCGCCAAAAGGTCGACAATGGCGCCGCCGCGTCGGAGAAACCGATGCCGACGACGAAGGATTCCAAGGAATTGGTCAAGCCGGAGCCCCCCGCTGATCCCGGAGAATGCAGCCCTCAGGATGCTCAGATCGCCGGCGGCGGCGCCGCCGCACACGACGGCAAGGTCGAGGCCACGCCGCCGATCGCCGATGGTACTTCACCGACTGTGGTGGCTGATAAACCTAGGGGTTCTTTCTCTTCTTGGAGTATATATCAGAAACTGAACCCGAATTTCGAAGCTTCAGTTCCCTGGTGTAGGCTTTTGTCTCAGTCTGCGCAGAATCCGAATGTTTTAATCTGCACACCCAACTTTACTATTGGCTCTAGTAGGGGTTGTAATTTTCCGTTGAAGGATCAGACTATAAGTGGAAATTTGTGCAAGATCAAGCATACACAGCGCGAGGGAAGTGTGGTTGCTGTGCTAGAAAGTACTGGTAGCAAAGGATCGGTGGTAGTGAATGGGACGCTAGTCAAGAAGAGTACCAGTTGCGTTCTTAACTCAGGGGACGAGGTGGTTTTTGGTTTGCTGGGGAATCATTCTTATATTTTTCAGCAAGTAAATACCGAAGTTACAATTAAGGGTGCGGAAGTTCCGAATGGTGTTGGCAAGTTTTTGCAGATTGAGAGGAGGGCTGGAGACCCTTCAGCCGTGGCTGGAGCCTCTATTTTAGCTTCTCTTTCTAACCTCAGACAAGATCTTACAAGATGGAAGTCTCCATCTCAGAATGCCAGTAAACCTCATCAGGGTACTGATGTTTTTAGCCGTTCTGCTCTCCCCGATGGTACAGAAACTGAGCTCGATGGCCTGGAAGGCAACTCAGCTCCAAATGTTGCGACTGATAAAGCTGCTGATGTTGGAGCAAGCGACAAGAATTCACCTATGGATTGCGATCCAGATGATGCAGGCGCAGAGGCAGGCAATGTAAAAATCTCTGGGGTGAATGCTTTCCTAGGGCCTTTCTTCAGGATTCTAGCTGGATCTACTTGTAAAGTGAAATTGAGCAAAAGTATCTGTAAACAGGTATTTGAAGAAAAAAATGGGACGAGGGATGTGCAAGCTGCATCGACGTCGGGTACTTCTGTACGCTGTGCAGTTTTTAAAGAAGACGTGCATGCTGCAATATTGGATGGTAAAGAAATTGAAGTCTCCTTTGACAACTTCCCGTACTACTTAAGTGAGAATACAAAAAATGTCCTAATTGCAGCTTGCTTTATACACCTGAGGCATAAAGAATGTGCAAAGTACACCACAGATCTTACAACCATAAACCCTCGCATTCTACTCTCTGGACCTGCAGGGTCAGAAATATATCAGGAGATGTTGGCAAAAGCACTTGCAAAACACTTTGGAGCTAAATTGCTCATATTTGATAGCCATTCACTTTTGGGTGGTTTATCTTCCAAAGAAGCTGAGCTGCTCAAAGATGGATTTAATGCTGAGAAATCCTGCAGCTTCGCTAAACAAAGTCCTACAGCCACAGACACGGCGAGGAGCATGGATCCACCAGCTAGTGAACCAGATACACCTAATTCCTCAAATGCACCTACTTCATACGGTGTTGAGTCTCAACCTAAGTTGGAAGCTGATAATGTTCCATCTACCTCTGGGACAGCTAAAAGTTGTGTGTTTAAACTAGGTGACAGGGTAAAGTATAATTGTTCATCTTCTTCGGGCTTTTATCAGACATCTTCAAGAAATTTCATATACAGGGGTCCAGCTAATGGAAGTCGGGGGAAGGTTGTCTTACTTTTTGATGATAATCCCTTGTCAAAAATTGGTGTAAGATTCGATAAACCCATACCGGATGGAGTTGATCTTGGAGGTGCCTGTGAGGGTGGTCAAGGATTTTTCTGCAATGTAGCTGATCTTCGATTGGAAAACAGTGGCATTGAAGAACTCGACAAATTACTTATTAATACATTATTTGAGGTAGTGGTTAGTGAGAGCAGAAATGCTCCATTCATTTTGTTCATGAAAGATGCGGAGAAGTCTATAGTAGGAAATGGAGATCCATTTTCATTTAAAAGTAAACTTGAAAATCTTCCAGACAATGTGGTGGTAATAGGTTCACACACCCACTCTGACAGTCGAAAGGAGAAGTCACATCCCGGGGGTTTGCTTTTTACTAAGTTCGGCAGTAATCAGACTGCCCTTCTTGATTTGGCATTCCCCGATAGTTTTGGAAGGTTGCATGACAGGGGAAAGGAGGTTCCAAAGCCAAACAAAACCTTAACTAAGCTTTTCCCAAATAAAGTGACAATTCATATGCCACAGGATGAGGCACTTCTAGCATCTTGGAAACAGCAACTTGATCGAGATGTTGAGACTCTTAAAATCAAAGGAAATTTGCATAATTTACGTACAGTTTTGAGCCGTTGTGGGATGGAATGTGAAGGACTTGAGACCTTGTGCATTAAGGATCACACACTTAGTATTGAAAATGCAGAGAAGATAGTTGGTTGGGCTTTAAGCCACCATCTCATGCGGAATGCTGAAACTGGTCCTGATGCAAAGCTTGTGTTGTCTTGTGAGAGCATCCAGTATGGGATTGGTATCTTACAGGCTATCCAGAATGAGTCTAAAAGCTTGAAGAAGTCTCTTAAGGATGTTGTAACAGAAAATGAGTTTGAAAAGAGGCTTTTGGCTGATGTTATTCCACCTAATGACATTGGTGTTACTTTTGATGATATTGGAGCTCTTGAAAATGTCAAGGATACATTGAAGGAATTGGTTATGCTTCCTTTACAGAGGCCTGAGCTATTTTGCAAAGGGCAATTAACCAAGCCGTGCAAGGGCATTCTATTATTTGGTCCCCCTGGAACAGGTAAGACAATGCTTGCGAAGGCAGTAGCTACTGACGCTGGTGCAAATTTCATCAACATTTCCATGTCAAGCATCACGTCTAAGTGGTTTGGCGAGGGTGAAAAATATGTGAAAGCTGTATTTTCACTGGCAAGTAAAATTGCTCCTAGCGTGATATTTGTTGACGAAGTTGATAGCATGTTGGGCAGGAGGGAAAATCCCGGAGAACATGAGGCCATGCGAAAGATGAAAAATGAATTCATGGTGAATTGGGATGGCTTACGCACAAAGGATACTGAGCGAGTTCTTGTGCTTGCAGCCACTAATAGGCCTTTTGACCTAGATGAGGCTGTCATACGGAGGCTGCCGCGAAGATTAATGGTAAATTTGCCAGACGCTCCAAATAGAGCAAAAATATTAAAAGTTATACTGGCAAAAGAGGACTTGTCTTCTGATGTTGATATGGATGCAATTGCAAGTATGACTGATGGTTATTCTGGAAGCGATCTTAAGAACTTGTGTGTAACTGCTGCACACCGTCCAATTAAAGAGATATTAGAAAAGGAAAAAAAGGAACAGGCTGCTGCTCTCGCAGAAGGTAGACCTGCTCCCGCATTAAGTGGAAGTGCTGATATCCGATCTTTAAACATGGAAGACTTCAAACATGCTCATCAACAGGTCTGTGCTAGTGTTTCCTCTGAATCCATAAATATGACCGAGCTTCAACAATGGAATGAACAATATGGTGAAGGTGGTTCAAGAGTAAAAAGAGCACTCAGCTATTTCATGTGA 3726 0.4404 MVSTRRNSGSFSNTNKRSSSSEDKTPSPSPKRQKVDNGAAASEKPMPTTKDSKELVKPEPPADPGECSPQDAQIAGGGAAAHDGKVEATPPIADGTSPTVVADKPRGSFSSWSIYQKLNPNFEASVPWCRLLSQSAQNPNVLICTPNFTIGSSRGCNFPLKDQTISGNLCKIKHTQREGSVVAVLESTGSKGSVVVNGTLVKKSTSCVLNSGDEVVFGLLGNHSYIFQQVNTEVTIKGAEVPNGVGKFLQIERRAGDPSAVAGASILASLSNLRQDLTRWKSPSQNASKPHQGTDVFSRSALPDGTETELDGLEGNSAPNVATDKAADVGASDKNSPMDCDPDDAGAEAGNVKISGVNAFLGPFFRILAGSTCKVKLSKSICKQVFEEKNGTRDVQAASTSGTSVRCAVFKEDVHAAILDGKEIEVSFDNFPYYLSENTKNVLIAACFIHLRHKECAKYTTDLTTINPRILLSGPAGSEIYQEMLAKALAKHFGAKLLIFDSHSLLGGLSSKEAELLKDGFNAEKSCSFAKQSPTATDTARSMDPPASEPDTPNSSNAPTSYGVESQPKLEADNVPSTSGTAKSCVFKLGDRVKYNCSSSSGFYQTSSRNFIYRGPANGSRGKVVLLFDDNPLSKIGVRFDKPIPDGVDLGGACEGGQGFFCNVADLRLENSGIEELDKLLINTLFEVVVSESRNAPFILFMKDAEKSIVGNGDPFSFKSKLENLPDNVVVIGSHTHSDSRKEKSHPGGLLFTKFGSNQTALLDLAFPDSFGRLHDRGKEVPKPNKTLTKLFPNKVTIHMPQDEALLASWKQQLDRDVETLKIKGNLHNLRTVLSRCGMECEGLETLCIKDHTLSIENAEKIVGWALSHHLMRNAETGPDAKLVLSCESIQYGIGILQAIQNESKSLKKSLKDVVTENEFEKRLLADVIPPNDIGVTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATDAGANFINISMSSITSKWFGEGEKYVKAVFSLASKIAPSVIFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLRTKDTERVLVLAATNRPFDLDEAVIRRLPRRLMVNLPDAPNRAKILKVILAKEDLSSDVDMDAIASMTDGYSGSDLKNLCVTAAHRPIKEILEKEKKEQAAALAEGRPAPALSGSADIRSLNMEDFKHAHQQVCASVSSESINMTELQQWNEQYGEGGSRVKRALSYFM 1241
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca03g00339 1241 MobiDBLite consensus disorder prediction 529 581 - -
Cca03g00339 1241 MobiDBLite consensus disorder prediction 1 104 - -
Cca03g00339 1241 Pfam FHA domain 149 218 IPR000253 GO:0005515
Cca03g00339 1241 MobiDBLite consensus disorder prediction 529 564 - -
Cca03g00339 1241 Gene3D - 935 1216 IPR027417 -
Cca03g00339 1241 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 936 1217 IPR027417 -
Cca03g00339 1241 Pfam ATPase family associated with various cellular activities (AAA) 977 1106 IPR003959 GO:0005524|GO:0016887
Cca03g00339 1241 PANTHER ATPASE FAMILY AAA DOMAIN-CONTAINING PROTEIN 1-A ISOFORM 1 385 1241 - -
Cca03g00339 1241 PANTHER ATPASE FAMILY AAA DOMAIN-CONTAINING PROTEIN 1-A ISOFORM 1 77 358 - -
Cca03g00339 1241 SUPERFAMILY SMAD/FHA domain 124 228 IPR008984 GO:0005515
Cca03g00339 1241 SMART AAA_5 973 1110 IPR003593 -
Cca03g00339 1241 CDD FHA 128 228 IPR000253 GO:0005515
Cca03g00339 1241 PANTHER AAA ATPASE, PUTATIVE (AFU_ORTHOLOGUE AFUA_2G12920)-RELATED-RELATED 77 358 - -
Cca03g00339 1241 PANTHER AAA ATPASE, PUTATIVE (AFU_ORTHOLOGUE AFUA_2G12920)-RELATED-RELATED 385 1241 - -
Cca03g00339 1241 MobiDBLite consensus disorder prediction 280 321 - -
Cca03g00339 1241 CDD AAA 975 1108 - -
Cca03g00339 1241 MobiDBLite consensus disorder prediction 1 26 - -
Cca03g00339 1241 Gene3D - 1109 1203 - -
Cca03g00339 1241 Coils Coil 897 917 - -
Cca03g00339 1241 Pfam AAA+ lid domain 1130 1165 IPR041569 -
Cca03g00339 1241 Gene3D - 127 236 - -
Cca03g00339 1241 MobiDBLite consensus disorder prediction 280 301 - -
Cca03g00339 1241 ProSitePatterns AAA-protein family signature. 1080 1099 IPR003960 GO:0005524|GO:0016887
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca03g00339 Cca-Chr3 5277211 5291705 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca03g00339 936 1188 Calmodulin-binding Proteins AT3G56690 40.000 3.56e-42 166
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca03g00339 - - gmx:100780098 2180.6
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca03g00339 03 5277211 5291705 Cca03g00339 03 5277211 5291705 ECH
Cca11g01726 11 41804524 41817346 Cca03g00339 03 5277211 5291705 PCT