Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca03g00333 ATGGCTCCGCACGATGTCCGCCGTCCGTTCAAGCGGCCGGCGATCTCCGATCAGGAGAGGCGCCGCCAACAGTCCCTCCTCCGCCAGGCACAGAACCGCCGCGACGCGCAGCACCACGCGCGCTTCTTAGCCTCCACCGCCCTCTCCCTCCCAACCCTAATCCCCGAGGccgaatccgaacccgaacccgaacccgaaccAACGGAAAACCCCGAACCTTCGAACGAGAGCCTCGACGTTCTCGGAGCCTCGAAGCTGAAAGCCGCGGAAGCTCGCAAGTGGTTCGCGAAGCAGCTCATGCTCCCGGAGTGGATGATCGACATTCCCAGCAACCTCTCCCAAGACTGGTTTGTATTCGCTCGTCCTTCCGGGAAACGGTGTTTCGTGGTTTCGTGTAACGGAACCACGATAAGCCGTCTTCGGAATGGTTCCATTCTGCATCGGTTCCCCTCCGCGTTGCCAGCCGGAGCGAGGAAGAAGGATTCCGGTCCCTCTCAGACTTACTCTATATTGGACTGCATTTTCCACGAGGGGGATCAGACTTATTACGTTATTGACATGCTTTGTTGGCGGGACTATTCTCTGTCTGATTGCACTGCAGAGTTTAGGTTCTTCTGGTTGAACTCCAAGCTTGTAGAGACTGGTGCTTGTGACCCTCCCTCACATTATCACAAGTATAGGTTTAGTTTGGTTCCGGTGTATGGTTGTGACTCGAATGGACTCTATGCTGCTTATTCGGCGCCGGTGCCTTATGTCAAAGATGGTCTTCTCTTTTGTAACAAGCATGCTCACTACCAGGCTGGAATTACGCCATTGGCGCTGGTTTGGAAGGATGAGAACTGTAGTCAGTATGTTATGGACACAGACAGTAAAGGGCAGGTTCCCAACCAACAGCAGGTGGTTTTGGAGCTTCAAGATGATGGAAAACTAGCTACCTCAGATGATCCTCCTGTGGTATTTGGCTGTTTAGATGGAAGCTTTATACAACAGTCGGGGTTGCAGTCAGGATATCTTTTGCGATTTTCAATTGGAGAGGGAGGATTAGTTTTGATGGATGGGAAGCTTGAGAAAGCTGATCTACATTATCTTGGCAAGGCCAATCGAGCTCGTGCCTCTGCTGATAGTTTCTCTAAGGTTATGTTCCAATACAGTGTTCGACACTCTCCCCTCAGAATTGATGGTCTTTTGGAATCGGTCAGCATACCAGTTGATCAAGAAAGCAAAGCTTGCGATGTTGAGATGGATGGTTGA 1251 0.5012 MAPHDVRRPFKRPAISDQERRRQQSLLRQAQNRRDAQHHARFLASTALSLPTLIPEAESEPEPEPEPTENPEPSNESLDVLGASKLKAAEARKWFAKQLMLPEWMIDIPSNLSQDWFVFARPSGKRCFVVSCNGTTISRLRNGSILHRFPSALPAGARKKDSGPSQTYSILDCIFHEGDQTYYVIDMLCWRDYSLSDCTAEFRFFWLNSKLVETGACDPPSHYHKYRFSLVPVYGCDSNGLYAAYSAPVPYVKDGLLFCNKHAHYQAGITPLALVWKDENCSQYVMDTDSKGQVPNQQQVVLELQDDGKLATSDDPPVVFGCLDGSFIQQSGLQSGYLLRFSIGEGGLVLMDGKLEKADLHYLGKANRARASADSFSKVMFQYSVRHSPLRIDGLLESVSIPVDQESKACDVEMDG 416
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca03g00333 416 MobiDBLite consensus disorder prediction 1 40 - -
Cca03g00333 416 MobiDBLite consensus disorder prediction 1 78 - -
Cca03g00333 416 CDD Snurportin-1_C 94 279 - -
Cca03g00333 416 PANTHER SNURPORTIN1 RNUT1 PROTEIN RNA, U TRANSPORTER 1 1 415 IPR017336 GO:0005634|GO:0005737|GO:0061015
Cca03g00333 416 Gene3D DNA ligase/mRNA capping enzyme 2 304 - -
Cca03g00333 416 SUPERFAMILY DNA ligase/mRNA capping enzyme, catalytic domain 94 277 - -
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca03g00333 K13151 - gmx:100801927 706.442
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca03g00333 03 5226138 5233696 Cca03g00333 03 5226138 5233696 ECH