Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca03g00330 ATGAGAAGGCCATGGAAACAATATTATAGCAAAAAACATGACTTGTTCGAGTATCTCCCGGACGATCTTGTTGTCTTCATTCTCTCTAAACTCAGCTCCACCGCTCCTTCTCCTTCTGATTTCATCAACATCATCTTAACATGCAAGAGACTAAACCGGTTAGGCCTACACCGTCTTGTGTTATCAAAAGCGGGGCCTAAAGTATTCGCCATAAAGCCCAAAAATTGGTCAGAGCATGCTCACTGTTTTCTCAAACACTGTGTCAACGCCGGCAACGTGGATGCGTGTTACACTCTCGGAATGATCCGATTTTACTGTCTGCAAAACCGAGGGAGCGGGCTCTCGTTAATGGCGAAGGCGGCGATGAAGTCTCACGCGGCGGCGCTGTACTCGCTGGCGGTAATTCAGTTCAACGGGAGCGGCGGTTCGAAGCGGAGCAAGGATCTAAGCGCCGGCGTGGCCCTATCGATGCGCGCGTCGCTGCTGGGCCACATCGACGCCCTGCGCGAGCTGGGGCACTGTCTCCAAGACGGTTACGGCGTGCGGCAGAACGTGGCGCAGGGACGGCGTCTTTTAGTGGAGGCTAACGTGCGCGAGCTGGCGTGCGTGCTACGCGCGGTGGCCCCCTCGCGCTACTTGTCGGTGACGTGGCAGGGCCCGTTGCTGAGCGAGTACGGGTGCAGCATCGCGGTGCCGGAGATTCAGGCGGTGAATTTGTTTCTGAGGGAATGGTTCGAGTCCGGTTTTGGGAAGTTGGGGGAGGGTTTGAGGCTGTGCGCGCACATTGGCTGCGGAAGGCCCGAGACCCGCCCCCACGAGTTCCGAAGGTGTTCCGTTTGTGGCAAAGTTAATTATTGCTCCCGAGGTTGTCAAGCTTTGGATTGGAAGTTACGACATAAATTGGAGTGTTCCGCCACCGAACTTTACGAAAATAACAACTTTCTGCTCCAAAACGCTCCCGTTTGA 966 0.5497 MRRPWKQYYSKKHDLFEYLPDDLVVFILSKLSSTAPSPSDFINIILTCKRLNRLGLHRLVLSKAGPKVFAIKPKNWSEHAHCFLKHCVNAGNVDACYTLGMIRFYCLQNRGSGLSLMAKAAMKSHAAALYSLAVIQFNGSGGSKRSKDLSAGVALSMRASLLGHIDALRELGHCLQDGYGVRQNVAQGRRLLVEANVRELACVLRAVAPSRYLSVTWQGPLLSEYGCSIAVPEIQAVNLFLREWFESGFGKLGEGLRLCAHIGCGRPETRPHEFRRCSVCGKVNYCSRGCQALDWKLRHKLECSATELYENNNFLLQNAPV 321
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca03g00330 321 PANTHER MYND DOMAIN-CONTAINING 6 312 IPR044508 -
Cca03g00330 321 Gene3D - 254 308 - -
Cca03g00330 321 PANTHER HCP FAMILY PROTEIN WITH MYND-TYPE ZINC FINGER PROTEIN 6 312 - -
Cca03g00330 321 SUPERFAMILY HIT/MYND zinc finger-like 257 305 - -
Cca03g00330 321 Pfam MYND finger 264 303 IPR002893 -
Cca03g00330 321 Gene3D Tetratricopeptide repeat domain 68 201 IPR011990 GO:0005515
Cca03g00330 321 ProSiteProfiles Zinc finger MYND-type profile. 261 303 IPR002893 -
Cca03g00330 321 SUPERFAMILY F-box domain 12 81 IPR036047 GO:0005515
Cca03g00330 321 SUPERFAMILY HCP-like 78 193 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca03g00330 Cca-Chr3 5151464 5152890 Transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca03g00330 - - gmx:100820040 519.62