Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca03g00326 ATGGCGGCTACAGCTTCCAAAACCCCAttctcttcttcatcttcttcttcttcttcgtcCTACTCCAACAACACCTTCCCCAAACTCATTCTCAGATCCACCCTCGCTCTCTCTCCCAACCTCACCCGCGCGCACCCTCTCGCAATCTCCTGCTCCCTCCCCAAGCCTgcgccggccgcagcggcggaggcggcggcccccgcggcggAGCCCTTCCTCTCGCGGTTCCCGGCGGGGGAGCCGCGGAAGGGCGCGGACATCCTGGTGGAGGCGCTGGAGCGGCAGGGCGTGACGACGGTGTTCGCGTACCCGGGCGGCGCGTCGATGGAGATCCACCAGGCGCTGACGCGCTCGGGCACCATCCGCAACGTGCTCCCGCGGCACGAGCAGGGCGGGGTGTTCGCCGCGGAGGGCTACGCGCGGTCCTCCGGGGTTCCCGGAGTGTGCATCGCGACCTCCGGCCCCGGCGCCACGAACCTGGTGAGCGGGCTGGCGGACGCGCTGATGGACAGCGTCCCCGTGGTGGCCATCACCGGGCAGGTCCCTCGGCGCATGATCGGCACCGACGCCTTTCAAGAAACCCCTATCGTGGAAGTGACGAGATCCATCACGAAGCACAATTATCTGGTGCTCGACGTCGACGACATTCCCAGGGTCGTCAACGAGGCCTTCTTCGTCGCCACTTCGGGCCGCCCCGGCCCAGTCCTTATCGACATTCCCAAAGACGTCCAGCAGCAGCTCGCCGTTCCTAATTGGGCCCAGCCCGTCAACCTCCCTGGCTACAACCACCGCCTCCCCAAGCCTCCCACCCCTGCCCAGTTGGAACACGTTGTCCGTCTCATCACTGAAGCCCAAAGGCCCGTTTTGTATGTCGGCGGTGGCTCTCTAAACTCCAGCCCCGAGTTGCGGCGCTTTGTCGATCTCACCGGGATTCCCGTTGCCAGCACTTTAATGGGCCTCGGCGctttccctctctctcaccctctctctctTCAAATGTTGGGCATGCATGGTACTGTTTATGCCAACTACGCCGTCGATAATAGTGATTTGTTGCTTGCCTTTGGGGTCAGGTTTGATGACCGTGTCACTGGCAAGCTCGAGGCTTTCGCTAGTAGGGCTAAGATTGTTCACATTGACATTGATTCTGCTGAGATTGGGAAGAACAAGCCGGCGCACGTGTCCATTTGTGCTGATTTGAAGGTGGCTTTGGAGGGGATTAACACGATTTTGGAGGATAAGGGTGTGAAGGGTAAGATTGATCTTGGAGCTTGGAGGGAAGAGCTTCATGTGCAGAAGCAGAAATTTCCATTGGGTTACAAGAGTTTTGAGGATGCTATTAGTCCTCAGTATGCTATTGAGGTTCTTGATGAGTTGACAAATGGGGATGCTATTGTTAGCACTGGTGTAGGGCAGCATCAAATGTGGGCTGCACAGTTTTATAAGTACAAGAGACCTAGGCAGTGGTTGACCTCCGGGGGTCTTGGAGCAATGGGTTTTGGTTTGCCTGCTGCAATGGGTGCTGCTGTGGCCAACCCTGCGGCTGTTGTGGTTGATATTGATGGGGATGGGAGTTTCATTATGAATGTTCAGGAGTTGGCTACCATAAGAGTGGAGAATCTCCCTGTGAAGATATTGTTGTTGAATAACCAGCACTTGGGTATGGTGGTTCAGTGGGAGGATCGCTTCTACAAGTCCAACAGGGCTCACACCTATTTGGGTGACCCGGCTAAGGAGAGTGAGATATTCCCAAACATGTTGAAGTTTGCGGATGCTTGCGGGATACCGGCGGCGCGTGTGACGAAGAAGGAAGAGCTTAGAGCGGCGATTCAGAGAATGTTGGACACCCCTGGCCCGTACCTTCTTGATGTCATCGTGCCCCATCAGGAGCATGTGTTGCCAATGATTCCCAGTAATGGATCCTTCAAGGATGTCATAACTGAGGGTGATGGCAGAACTAGGTACTGA 1968 0.5366 MAATASKTPFSSSSSSSSSSYSNNTFPKLILRSTLALSPNLTRAHPLAISCSLPKPAPAAAAEAAAPAAEPFLSRFPAGEPRKGADILVEALERQGVTTVFAYPGGASMEIHQALTRSGTIRNVLPRHEQGGVFAAEGYARSSGVPGVCIATSGPGATNLVSGLADALMDSVPVVAITGQVPRRMIGTDAFQETPIVEVTRSITKHNYLVLDVDDIPRVVNEAFFVATSGRPGPVLIDIPKDVQQQLAVPNWAQPVNLPGYNHRLPKPPTPAQLEHVVRLITEAQRPVLYVGGGSLNSSPELRRFVDLTGIPVASTLMGLGAFPLSHPLSLQMLGMHGTVYANYAVDNSDLLLAFGVRFDDRVTGKLEAFASRAKIVHIDIDSAEIGKNKPAHVSICADLKVALEGINTILEDKGVKGKIDLGAWREELHVQKQKFPLGYKSFEDAISPQYAIEVLDELTNGDAIVSTGVGQHQMWAAQFYKYKRPRQWLTSGGLGAMGFGLPAAMGAAVANPAAVVVDIDGDGSFIMNVQELATIRVENLPVKILLLNNQHLGMVVQWEDRFYKSNRAHTYLGDPAKESEIFPNMLKFADACGIPAARVTKKEELRAAIQRMLDTPGPYLLDVIVPHQEHVLPMIPSNGSFKDVITEGDGRTRY 655
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca03g00326 655 Gene3D - 274 438 - -
Cca03g00326 655 CDD TPP_AHAS 447 638 IPR039368 GO:0030976
Cca03g00326 655 MobiDBLite consensus disorder prediction 1 23 - -
Cca03g00326 655 Pfam Thiamine pyrophosphate enzyme, N-terminal TPP binding domain 83 246 IPR012001 GO:0030976
Cca03g00326 655 Gene3D - 72 265 - -
Cca03g00326 655 TIGRFAM acolac_lg: acetolactate synthase, large subunit, biosynthetic type 83 647 IPR012846 GO:0000287|GO:0003984|GO:0009082|GO:0030976|GO:0050660
Cca03g00326 655 PANTHER ACETOLACTATE SYNTHASE 49 654 - -
Cca03g00326 655 SUPERFAMILY Thiamin diphosphate-binding fold (THDP-binding) 446 646 IPR029061 -
Cca03g00326 655 SUPERFAMILY Thiamin diphosphate-binding fold (THDP-binding) 78 259 IPR029061 -
Cca03g00326 655 Gene3D - 439 625 - -
Cca03g00326 655 Pfam Thiamine pyrophosphate enzyme, C-terminal TPP binding domain 469 624 IPR011766 GO:0003824|GO:0030976
Cca03g00326 655 ProSitePatterns Thiamine pyrophosphate enzymes signature. 506 525 IPR000399 GO:0000287|GO:0030976
Cca03g00326 655 CDD TPP_PYR_POX_like 86 241 - -
Cca03g00326 655 Pfam Thiamine pyrophosphate enzyme, central domain 275 405 IPR012000 GO:0000287|GO:0030976
Cca03g00326 655 PANTHER THIAMINE PYROPHOSPHATE ENZYMES 49 654 IPR045229 -
Cca03g00326 655 SUPERFAMILY DHS-like NAD/FAD-binding domain 270 437 IPR029035 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca03g00326 Cca-Chr3 5106014 5108506 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca03g00326 K01652 - gmx:100782250 1112.44