Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca03g00309 ATGGCGGCAATTAGCAACATCGGTTTACGATTTCCAGGGAATTTAATCGATCCAAAGAAGGAGAATGTGGCCACAACAGGGGGAGTTTTTAGGGTTAGTTTTTACACACCTCGCAATACTAACATGTCTAATGTTAAACGAAGATTTTTATCTGTGACCGCAAGTTATCGTGATAGTCCTCAAAAAATAGACACCGCGAATAGAGTGAATGTAAACGGAATTCATGTGGCTGTGGCTCCTCCACAAGGAGGCAAGTTGGCAAATGAAAGAGCAGAAGATGAAGCTATTGTTACCAGCTTACGTGGAAGGTTTGTGGAGGCTAAGTTTGTGTTTAGGCAAATTTTTGTTATCAGATCTTATGAAATTGGACCAGATAAAACTGCCACAATGGAGACACTCATGAATTTTCTTCAGGAAACTGCTTTAAATCATGTGACCAGCTCCGGGATTGGTGGAGACGGATTTGGAGCAACCCGAGAGATGAGTATTCGGAAACTCATTTGGGTTGTTACTCGAATTCAAGTTCAAGTGCAAAGATATAACAAATGGGGAGACGAAATTGAAGTTGATACTTGGGTCGATGCAGCAGGAAAGAATGGAATGAGAAGAGATTGGATAATCAGAGATCACTACACCAAAGAGATCATAACAAGAGCAACAAGCACATGGGTGATCATGAATAGACAAACAAGAAGACTATCCAAGATACCAGAAGAAGTTAGACAAGAGCTTGTTCCTTTTTACCTTAATAGGCTTGCTGTTCCTATTGAAGAAGCAGATTGTGAAAAGATAGACAAGCTCACTGATGAGACTGCTGAGAGAATCCGATCTGGATTGGCCCCTAGGTGGAATGACATGGATGCTAACCAGCATGTCAACAATGTGAAATACATTGGATGGATTTTAGAGAGCGTGCCAATTGAAGTGTTAGAAGATTATAACATGACGAGCATGACTTTGGAGTATCGACGTGAATGTACACAATCAAATTTGTTGGAATCCATGACATGTCCAACAGCAAGAGTTATTGAGTCCAATAATAATTCCAAGAACAGAAAACCTGATCTGGAATACACACACTTGCTTCGTCTGCAACAAGATAAAGCAGAAATTGTCCGAGCCAGAACTGAATGGAATTTTAAGCAAAAGCAACAGTGGTAA 1161 0.4048 MAAISNIGLRFPGNLIDPKKENVATTGGVFRVSFYTPRNTNMSNVKRRFLSVTASYRDSPQKIDTANRVNVNGIHVAVAPPQGGKLANERAEDEAIVTSLRGRFVEAKFVFRQIFVIRSYEIGPDKTATMETLMNFLQETALNHVTSSGIGGDGFGATREMSIRKLIWVVTRIQVQVQRYNKWGDEIEVDTWVDAAGKNGMRRDWIIRDHYTKEIITRATSTWVIMNRQTRRLSKIPEEVRQELVPFYLNRLAVPIEEADCEKIDKLTDETAERIRSGLAPRWNDMDANQHVNNVKYIGWILESVPIEVLEDYNMTSMTLEYRRECTQSNLLESMTCPTARVIESNNNSKNRKPDLEYTHLLRLQQDKAEIVRARTEWNFKQKQQW 386
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca03g00309 386 SUPERFAMILY Thioesterase/thiol ester dehydrase-isomerase 276 378 IPR029069 -
Cca03g00309 386 CDD 4HBT 111 227 - -
Cca03g00309 386 PANTHER ACYL-[ACYL-CARRIER-PROTEIN] HYDROLASE 30 384 - -
Cca03g00309 386 Gene3D Hotdog Thioesterase 102 384 - -
Cca03g00309 386 SUPERFAMILY Thioesterase/thiol ester dehydrase-isomerase 106 251 IPR029069 -
Cca03g00309 386 PANTHER OLEOYL-ACYL CARRIER PROTEIN THIOESTERASE 1, CHLOROPLASTIC 30 384 IPR045023 GO:0006633|GO:0016297
Cca03g00309 386 Pfam Acyl-ACP thioesterase 110 379 IPR002864 GO:0006633|GO:0016790
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca03g00309 Cca-Chr3 4782835 4786299 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca03g00309 102 381 Acyl Lipid Metabolism Gene Families AT1G08510 57.857 3.69e-113 335
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca03g00309 K10781 - gmx:100814191 676.011
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca03g00309 03 4782835 4786299 Cca03g00309 03 4782835 4786299 ECH