Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca03g00308 ATGACATCAATGGTGGCACCCATCAACATTGGGCTACAATCTCCAGGAAATTGGTGCAATGCGAAGAAGAAGATTTTAGAGAAGGCGAATCCAAGGCTTAATTCCTCATGCAACACTAACGCAAGATTGAATGATAAACGAAGATCTTCGTCGTTGATGACTGCAAGTTCTAATAGTAGTCCTGGGGTAATGGAAAATGTGTCTTTGGCTCATCTTACAACAGACAAGTCGCCAAATGAAAGCCCATTTCGTGGAAAGATTGTGCAGGACAGGCATGTCTATAAGCAGATTTTCCTTGTCGGGTGTTACCAAATTGGACCAGATAAAACTATCACCATGGAGACACTCATGAATTTTCTCCAGGAAACTGCTATAAGGCATATCTGCTTCATTTCCGCCCCAGTTCAGAATGATGTTGGAGCAACTCACGAAATGGAGCTTCGCAAACTCACTTGGATTGTTACTCGTATTCAAGTTCAAGTACAGAGATATAGCAAACGGGGAGATGAAATTGAGGTTGATACTTGGAGTGATAGTGCGGGAAAGAATGGAATGCGAAAAGATTGGATAATCAAAGATTATTATACCAAAGAGATCTTAGCAAAGGCAACCAGCACATGGACGTTGATGAATACCGAAACAAGAAGATTATCCAAGATACCTGATGAAGTTAGACAAGAACTTAATCCTTTCGTGTTTCATAAGCATGCCATTGAAGAAATAGATCATCGGAAGATACCAAAGCTCAATGATGCCATTGCTGAGAGATTTCGCAATGGGGTGACTCCAACGTGGAATGACATGGATGCTAACATGCATGTTAGCAATGTAAAATATATCAAATGGATCTTAGAGAGCGTGCCAAGAGAAGTGTTAGAAATTTACAAAATGACGAGCATTACTTTGGAGTTTCGGCGTGAATGTAGGCATTCAGATGTGTTGGAATCACTGAGTAGTCCATCATCCAGAGTGGTTGGTGATGCTAATAATAATAACAGAAAAGCCGACCTGGAATATATACACCTTCTTCGTCTACAAGACAGTAAAGCGGAGTTGGTCCGAGCAAGAACAGAATGGCTACATAAGCAAAACCAGCAGTGA 1101 0.4105 MTSMVAPINIGLQSPGNWCNAKKKILEKANPRLNSSCNTNARLNDKRRSSSLMTASSNSSPGVMENVSLAHLTTDKSPNESPFRGKIVQDRHVYKQIFLVGCYQIGPDKTITMETLMNFLQETAIRHICFISAPVQNDVGATHEMELRKLTWIVTRIQVQVQRYSKRGDEIEVDTWSDSAGKNGMRKDWIIKDYYTKEILAKATSTWTLMNTETRRLSKIPDEVRQELNPFVFHKHAIEEIDHRKIPKLNDAIAERFRNGVTPTWNDMDANMHVSNVKYIKWILESVPREVLEIYKMTSITLEFRRECRHSDVLESLSSPSSRVVGDANNNNRKADLEYIHLLRLQDSKAELVRARTEWLHKQNQQ 366
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca03g00308 366 Pfam Acyl-ACP thioesterase 92 359 IPR002864 GO:0006633|GO:0016790
Cca03g00308 366 PANTHER OLEOYL-ACYL CARRIER PROTEIN THIOESTERASE 1, CHLOROPLASTIC 23 365 IPR045023 GO:0006633|GO:0016297
Cca03g00308 366 SUPERFAMILY Thioesterase/thiol ester dehydrase-isomerase 248 360 IPR029069 -
Cca03g00308 366 PANTHER ACYL-[ACYL-CARRIER-PROTEIN] HYDROLASE 23 365 - -
Cca03g00308 366 SUPERFAMILY Thioesterase/thiol ester dehydrase-isomerase 89 236 IPR029069 -
Cca03g00308 366 Gene3D Hotdog Thioesterase 84 365 - -
Cca03g00308 366 MobiDBLite consensus disorder prediction 37 64 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca03g00308 Cca-Chr3 4747954 4753157 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca03g00308 82 362 Acyl Lipid Metabolism Gene Families AT1G08510 48.410 5.81e-89 272
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca03g00308 K10781 - gmx:100791811 469.929
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca03g00308 03 4747954 4753157 Cca03g00308 03 4747954 4753157 ECH