Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca03g00304 ATGGACGATTCAGACTCCGAGCTCGAGCTCTACACCATCCCAAGCTCTTCAAGATGGTTCGCGTGGGACGAAATCCACGAGACGGAGCGAACGGCGTTCAAGGAATTCTTCGACGGGAGCTCGGTGTCGCGAACCCCCAAGATATACAAAGAGTACCGCGACTTCATCATCAACAAGTACCGCGAGGAGCCCTCGCGGAGGCTCACGTTCACCGAGGTGCGCAAGTCGCTGGTGGGTGACGTCACGTTCCTGCGCAAGGCGTTCCTCTTTCTCCAGAATTGGGGTCTGATCAACTACGGCGCGCCTTCCGCTGCGGACGCGGAGGGGGATGTGGAGGACGAGTGCAGGGTTCGGGTCGAGGATGGGGCGCCCACCGGGATTCGCGTGGCGGCCACGCCGAACTCGCTGAAGCCGATGGCGGGGGGGCGCGGCGCCGCCAAGAGTGGGGGGAGTGCGAGTGGGGGTTCGCTCAAGTTGCCGCCGCTGGCTTCGTATTCTGATGTTTATGGCGATTTGATTAGGCAGAAGGAGGTCAAGTGTGGGCTTTGCGGTGATAAATGTGGTTCTGGACATTACCGATGTAGCCAGGATAATTTCATTATTTGTACAAATTGCTTCAAAAGTGGGAATTTCGGGGAGAGAAGGTCTGCAGAGGATTTCGTATTAAGTGAGTCAAGTGAAAATAGTGGCAAACACGACACTGTCTGGACTGAAGGAGAAACTCTTCTCCTTTTAGAATCTGTGTTGAAGCATGGGGATGATTGGGAACTTGTTGCTCAAAGTGTTCAAACCAAGACTAAACTTGATTGTATCTCAAAACTCATTGAGCTTCCCTTTGGGGAGCTCATGTTGGGCTCTGCTCACAGAAATGTTAACAGTAACAGTGTTAATGGCATCATGAACAATGCAAAGCAAGTTCAGTCATCTTCAGCTGACGATCAAGAAACTTCCAAGACAAATGACCAATGTCCTGAGCTACCAAATGAAAATGAGCAGAATGGGGATGCTGTGAAGGAAAGTCCTTCAAAAAGACAGCGTGTTGCTGCCCTTTCAGATTCCAGCAGTTCATTAATGAATCAGGTGGGGCTGATCTCTACTGTGGTTGATCCTCATATCACAgctgctgcagctgatgctgctgTTTCAGCACTTTGTGATGAAAATTTGTGTCCAAGGGAGATATTTGATGTTGAAGAGGATGAAGGTTTAGAGACCGAGAGGTCCTCTCTGTCAGAAATGGATCACAGCTGTCCAAAGGATGGCATACCTTTGACACTGCGTGTTAGAGCTGCCACTGCAACTGCTCTTGGAGCTGCTGCTGCTCGAGCAAAGTTGTTGGCCGACCAGGAATACAGAGAGATCGAACATTTAGTGGCAACTATAATTGACGCACAGATTGAGAAATTGCTACACAAGGTTAAACATTTTGACGATCTGGAGCTGTTGATGGAGAAGGAACACGCTGAAATGGAAAATCTAAAAGATTCTATCTTGACTGATCGAATTGATGTGTTACGGAGAACATTTAGGTCTGGAATCACTAGATGGAAGGATTATTCGTATGTAAAATCTTAG 1575 0.4819 MDDSDSELELYTIPSSSRWFAWDEIHETERTAFKEFFDGSSVSRTPKIYKEYRDFIINKYREEPSRRLTFTEVRKSLVGDVTFLRKAFLFLQNWGLINYGAPSAADAEGDVEDECRVRVEDGAPTGIRVAATPNSLKPMAGGRGAAKSGGSASGGSLKLPPLASYSDVYGDLIRQKEVKCGLCGDKCGSGHYRCSQDNFIICTNCFKSGNFGERRSAEDFVLSESSENSGKHDTVWTEGETLLLLESVLKHGDDWELVAQSVQTKTKLDCISKLIELPFGELMLGSAHRNVNSNSVNGIMNNAKQVQSSSADDQETSKTNDQCPELPNENEQNGDAVKESPSKRQRVAALSDSSSSLMNQVGLISTVVDPHITAAAADAAVSALCDENLCPREIFDVEEDEGLETERSSLSEMDHSCPKDGIPLTLRVRAATATALGAAAARAKLLADQEYREIEHLVATIIDAQIEKLLHKVKHFDDLELLMEKEHAEMENLKDSILTDRIDVLRRTFRSGITRWKDYSYVKS 524
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca03g00304 524 CDD SANT 236 273 IPR001005 -
Cca03g00304 524 Pfam Myb-like DNA-binding domain 236 274 IPR001005 -
Cca03g00304 524 Gene3D - 232 280 - -
Cca03g00304 524 ProSiteProfiles Myb-like domain profile. 228 270 IPR001005 -
Cca03g00304 524 Coils Coil 476 496 - -
Cca03g00304 524 SUPERFAMILY Homeodomain-like 8 104 IPR009057 -
Cca03g00304 524 ProSiteProfiles SANT domain profile. 231 282 IPR017884 -
Cca03g00304 524 Gene3D - 17 103 IPR036388 -
Cca03g00304 524 MobiDBLite consensus disorder prediction 304 351 - -
Cca03g00304 524 MobiDBLite consensus disorder prediction 132 154 - -
Cca03g00304 524 Pfam SWIRM-associated region 1 434 508 IPR032451 -
Cca03g00304 524 Pfam SWIRM domain 14 99 IPR007526 GO:0005515
Cca03g00304 524 PANTHER BRAHMA ASSOCIATED PROTEIN 155 KDA 10 515 - -
Cca03g00304 524 ProSiteProfiles SWIRM domain profile. 11 108 IPR007526 GO:0005515
Cca03g00304 524 SUPERFAMILY Homeodomain-like 231 283 IPR009057 -
Cca03g00304 524 PANTHER SWI/SNF COMPLEX-RELATED 10 515 - -
Cca03g00304 524 SMART sant 232 280 IPR001005 -
Cca03g00304 524 MobiDBLite consensus disorder prediction 304 335 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca03g00304 Cca-Chr3 4615045 4619701 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca03g00304 K11649 - gmx:100800135 822.772
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca03g00304 03 4615045 4619701 Cca03g00304 03 4615045 4619701 ECH