LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Cca03g00303	ATGGCCACCGAAACCCTAGAAGACTCCAAGCCTCCGCTCCACGACGCCAAATCGCCACCGGCCTCCGAGATTCCGGAGAAGGAGCCTTCCGCGGAGGCCGCTAAATCcgaggacgatgtcgacggagcgagcaaccgggaagtagaagaggaagacgccggcgagaagaaagagatcgacgaggacgacgaagaggagaaagacgacgatgaagaggagaaagacgacaacgacgatgaggaagaagtggaagaggaggaggacgaagcggaagagaaagagaaagcgaaggctaagggaaagggacgcggcaaggagactccgaagaagagtaaAGCATCGGAGAAGAAGGATCCAGTTACGCCGGCGAGTGAGAGGCCAACGAGGGAGAGGAAAACGGTGGAGCGTTACTCTGTGCCCTCGCCGGCCAAGTCTGCGAGATCCTCCGCTAGTAAAGGTTTCACAATTGAGAAGGGACGTGGCACGCAGCTCAAGGATATACCAAACGTGGCTTTTAAATTGTCCAAGAGAAAACCTGATGACAACCTGCATATGCTTCATACTTTACTGTTTGGGAAGAAAACAAAGGCACACAATTTAAAGAGAAATATAGGCCAATTTTCTGGTTACGTGTGGACTGAGAATGAGGACAAACAGAGAACCAAGGTAAAGGAGAGGATTGACAAATTTGTCAAAGAAAAGTTGTTGGACTTCTGTGATGTTCTTAATATTCAAATAAACAAGACCAATGTGAAGAAGGAGGAGCTGTCGGCAAAGCTTTTGGAATTTTTGGAATCCCCCCATGCTACAACTGATATTCTACTTGCTGATAAAGAGCAGAAAGGTAAAAAAAGAACCAGAAAGCCAGCCCTCAGCAAATCCCCTGGGGAAGCATCTACAGAACCACCTGGCAAGAAGCAAAAACAAACTTCTCAATCGGCTAAAAAGCAAAAGCAGTCTTCTGATGATGACGAGGATGATAAAGCTGAGCTTTCAGATGCAAAAGATGATTCTCAGGAAGATGAAGATGTTGCAGCACCAAACCGTGAAAGTGATGATGAGGAAAGTAAATCAGAGGAAGAGGAAGCGAAACCAAAGGGTCGCAAGCGTACTTCTAAAAAGATTGTTAAAGAGAGTTCAGTTAGCAAGGCTGGGGATAGAACCTCTTCTGTCAAGAAGGCCTCTGTGAAAGATGCCAAGAGCACTGAAAAAACTAAAAAAACACCAACATCGAAAAAGAATGTTGCTGAACATGACAGTGCTTCTGCCTCTGTATCCAAGTCAAAGCAACCTGCATCCAAGAAACAGAAAACTGTAAGTGAAAAGCAGGGCACTAGAGGAAAGTCTGCAAGCAAAAAACAATCTGACAAATCCTCAAAGGCTTTGGTTAAGGATCAAGGGAAAAGTAAAAGTAATAAGAAGGCCAAGGCAGAACCTACAAAGCAGGATATGCATGCTGTAGTTGTTGATATTCTGAAGGAAGTAGATTTTAATACTGCAACTTTGTCCGATATCCTCAGGCAACTTGGTACCCACTTTGGTCTGGATTTAATGCATAGAAAAGCAGAGGTGAAGGATATAATTACAGAAGTAATTAAtaacatgtctgatgaggaagatgaagaagaagcagagaatgatggcgatgcagataaagacgatgatggtgatgatgatgCCTGA	1683	0.3583	MATETLEDSKPPLHDAKSPPASEIPEKEPSAEAAKSEDDVDGASNREVEEEDAGEKKEIDEDDEEEKDDDEEEKDDNDDEEEVEEEEDEAEEKEKAKAKGKGRGKETPKKSKASEKKDPVTPASERPTRERKTVERYSVPSPAKSARSSASKGFTIEKGRGTQLKDIPNVAFKLSKRKPDDNLHMLHTLLFGKKTKAHNLKRNIGQFSGYVWTENEDKQRTKVKERIDKFVKEKLLDFCDVLNIQINKTNVKKEELSAKLLEFLESPHATTDILLADKEQKGKKRTRKPALSKSPGEASTEPPGKKQKQTSQSAKKQKQSSDDDEDDKAELSDAKDDSQEDEDVAAPNRESDDEESKSEEEEAKPKGRKRTSKKIVKESSVSKAGDRTSSVKKASVKDAKSTEKTKKTPTSKKNVAEHDSASASVSKSKQPASKKQKTVSEKQGTRGKSASKKQSDKSSKALVKDQGKSKSNKKAKAEPTKQDMHAVVVDILKEVDFNTATLSDILRQLGTHFGLDLMHRKAEVKDIITEVINNMSDEEDEEEAENDGDADKDDDGDDDA	560

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Cca03g00303	560	MobiDBLite	consensus disorder prediction	54	91	-	-
	Cca03g00303	560	Coils	Coil	73	103	-	-
	Cca03g00303	560	MobiDBLite	consensus disorder prediction	326	340	-	-
	Cca03g00303	560	MobiDBLite	consensus disorder prediction	390	414	-	-
	Cca03g00303	560	SUPERFAMILY	DEK C-terminal domain	472	533	-	-
	Cca03g00303	560	MobiDBLite	consensus disorder prediction	341	381	-	-
	Cca03g00303	560	Pfam	DEK C terminal domain	479	531	IPR014876	-
	Cca03g00303	560	MobiDBLite	consensus disorder prediction	415	433	-	-
	Cca03g00303	560	MobiDBLite	consensus disorder prediction	274	484	-	-
	Cca03g00303	560	MobiDBLite	consensus disorder prediction	1	160	-	-
	Cca03g00303	560	MobiDBLite	consensus disorder prediction	434	484	-	-
	Cca03g00303	560	MobiDBLite	consensus disorder prediction	533	560	-	-
	Cca03g00303	560	MobiDBLite	consensus disorder prediction	142	156	-	-
	Cca03g00303	560	PANTHER	OS01G0924900 PROTEIN	46	554	-	-
	Cca03g00303	560	MobiDBLite	consensus disorder prediction	92	137	-	-
	Cca03g00303	560	Gene3D	-	470	534	-	-
	Cca03g00303	560	MobiDBLite	consensus disorder prediction	28	53	-	-
	Cca03g00303	560	PANTHER	DEK PROTEIN	46	554	IPR044198	GO:0003677\|GO:0006325

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Cca03g00303	Cca-Chr3	4600066	4606286	Dispersed/Wgd

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Cca03g00303	K17046		-	gmx:100813123	638.262

Event-related genes

Select	Gene_1	Chr_1	Start_1	End_1	Gene_2	Chr_2	Start_2	End_2	Event_name
	Cca03g00303	03	4600066	4606286	Cca03g00303	03	4600066	4606286	ECH