Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca03g00298 ATGAAGAGAAAGAGAGAAGGCAAAGAGGAGATGGATATCGTGTGGCAGACCCCAGCAAATCCCCCGCACCCGCACGATTATATCACTCGAAACGGAATTCGATTCGTTAGACCATACTACTTCGAGTTCATCGCTCATGTTAAGAATCGGTGGGCGGGGAAAACCATTGTGGATTTATTCGCTGAGGAGTTTAAAGGTCGACCTTATGAGTATTATGTTGGTGCAGTGAAATGTGGTAGGATTCAAGTAGATGGTGAGATGGTACCGGTTTCATACATTGTTAAATCATCTCAAAAGATAAGCCATTTCGTACACAGGCACGAACCACCTGTGATGGCTTGTGATGTTCCTATTCTTCAAAAAGAACCAGATGTCCTAACTGTTTGTAAGCCAGCATCTATCCCTGTGCACCCATGTGGTCAATATCGAAAGAACACTGTTGTTGGCATTCTTCAAGCTGAGCATGGGCTGGCACCCCTATTTCCTGTTCATAGACTTGATCGCCTTGTCTCAGGACTTCTTATTTTGGCCAGAAATGCTGCAAAAGCTGACATTTTTAGGCAACAGATAGAAGCTGGCTTAGTTCACAAACAGTATATAGCAAAAGTAGTTGGGGCATTTCCTGAGGATGAGCTAATTATTGATGCCAATATAGACTATAATGCACGGGAAGGAAGGAGCACAGCAGAGGTTGGAGGCTCTGCAAAGGGGAAGGCTGCCTCTACAAAATTTACTCGGATTAGTACTAATGGAACTCAAAGTATTGTTTTATGTGAACCAATTACTGGCCGTACTCATCAAATACGCGTTCATTTACAATATTCAGGGCACCCAATAGCCAATGACATGCTGTACATCTCAGAACAAACTGTTGATCGATCTGTTAAAGGGTTGAGTGCTGATAGATCAGCCTGCATATCTGATGCTTCTCTGGCATCAAATTTTGATGACAAGGTGCTCAATGCATGCGAAGAAAATTCTAATGGAGGTTTTAGCATTGACCCCATGTGTACAAATTGTCCAAATTTGGCACCCAAAGGATATGATGCTGATGAAGAAGGTCTATGGCTACATTGTATTCGTTACTCTGGACCTGAATGGACGTATGAGTGTCCATATCCTGATTGGGCGAAACTTAGCTAG 1143 0.4304 MKRKREGKEEMDIVWQTPANPPHPHDYITRNGIRFVRPYYFEFIAHVKNRWAGKTIVDLFAEEFKGRPYEYYVGAVKCGRIQVDGEMVPVSYIVKSSQKISHFVHRHEPPVMACDVPILQKEPDVLTVCKPASIPVHPCGQYRKNTVVGILQAEHGLAPLFPVHRLDRLVSGLLILARNAAKADIFRQQIEAGLVHKQYIAKVVGAFPEDELIIDANIDYNAREGRSTAEVGGSAKGKAASTKFTRISTNGTQSIVLCEPITGRTHQIRVHLQYSGHPIANDMLYISEQTVDRSVKGLSADRSACISDASLASNFDDKVLNACEENSNGGFSIDPMCTNCPNLAPKGYDADEEGLWLHCIRYSGPEWTYECPYPDWAKLS 380
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca03g00298 380 CDD PseudoU_synth_ScRIB2 101 378 - -
Cca03g00298 380 Gene3D Pseudouridine synthase 109 363 - -
Cca03g00298 380 ProSitePatterns Rlu family of pseudouridine synthase signature. 163 177 IPR006224 GO:0001522|GO:0003723|GO:0009451|GO:0009982
Cca03g00298 380 Pfam RNA pseudouridylate synthase 125 273 IPR006145 GO:0001522|GO:0003723|GO:0009451|GO:0009982
Cca03g00298 380 PANTHER MITOCHONDRIAL RNA PSEUDOURIDINE SYNTHASE 22 379 - -
Cca03g00298 380 TIGRFAM rluA_subfam: pseudouridine synthase, RluA family 50 294 IPR006225 GO:0001522|GO:0003723|GO:0009451|GO:0009982
Cca03g00298 380 SUPERFAMILY Pseudouridine synthase 108 377 IPR020103 GO:0001522|GO:0003723|GO:0009451|GO:0009982
Cca03g00298 380 PANTHER PSEUDOURIDINE SYNTHASE 22 379 - -
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca03g00298 K15454 - gmx:100811500 728.783
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca03g00298 03 4551047 4558530 Cca03g00298 03 4551047 4558530 ECH