Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca03g00278 ATGGAGAATATTGGTTTGAGTGTATGGCTTATACTCTTGTTGGGGTGCATCCTTTCCTCGGAATCCAAGTATATAAGGTACAACACAACTTCAACCATTGTTCCTGGGAAGCTCAATGTCCACTTGGTCCCTCACTCTCACGATGATGTTGGATGGTTGAAGACCATTGATCAGTACTATGTTGGTTCCAACAACTCAATTCAGGGTGCGTGTGTTCAAAACGTGCTAGATTCCCTGGTACCAGCATTGTTGGCAGACAAGAATCGCAAGTTCATATATGTTGAACAGGCATTTTTCGAGCGGTGGTGGAGGGAACAAAGTGATGCTATCCAGAACATAGTCAAGGGGCTGGTCAACTCTGGTCAATTAGAGTTCATAAATGGTGGTTATTGTATGCACGATGAGGCTACTGCTCATTACATTGACATGATTGATCAGACAACTCTTGGACATCAATTTCTTAAAGAAGAATTTGGGGTGACTCCGAGAATAGGGTGGCAGATTGATCCATTTGGACATTCTGCTGTACAGGCCTACTTGTTGGGAGCAGAGGTTGGATTTGACTCTCTATTCTTTGCACGGATTGATTACCAAGACAGAGCTAAGAGAAAAGATGAAAAATCTCTTGAAGTTGTGTGGCGAGGCTCTAAGAGCCTTGGTTCATCATCACAGATATTTTCTGGTGCATTCCCTGAGAATTACGAACCTCCCAGTAATTTCTACTATGAAGTAAACGACGATTCTCCCATTGTTCAGGATGATGTCAGTTTATTTGATTACAATGTCCCTGAAAGAGTAAATGAGTTTGTTGCAGCCGCAATTTCACAGGCCAATATTACGCGCACAAATCATATAATGTGGACAATGGGGACAGATTTCAAGTACCAATATGCACATACCTGGTTTCGGCAAATGGACAAGTTTATTCACTATGTCAATCAAGATGGCCGGGTTCATGCCCTATACTCGACCCCATCAATATATACTGATGCAAAACATGCTGCAAATGAGGCCTGGCCAATCAAGACTGATGACTACTTTCCGTATGCAGATCGTGTGAATGCCTATTGGACGGGGTATTTTACAAGCAGGCCAGCTCTCAAAGGTTATGTTAGATTGATGAGTGGCTACTACTTGGCAGCAAGGCAGTTGGAGTATTTTAAAGGGAAGAGTGCCTTAAGCCCCAAAACTGACTCTTTGGCCGAAGCTTTGGCTATTGCTCAACACCATGATGCAGTAACTGGTACAGAAAAGCAACACGTTGCTAATGATTATGCTAAACGGCTTTCAATAGGTTACACAGAGGCCGAGGAAGTTGTTGCAGTATCGCTTGCTTGTTTGACAGAGGGAAAAACCAAAACAGATTGCAGCAGCCCACAGATTAAATTTCAGCAGTGTCCACTTCTGAACATAAGTTACTGTCCCGCATCAGAAGTTGACTTCTCAAATGGGAAAAACCTGGTGGTGGTTGCTTACAATCCTCTGGGATGGAAAAGAGAGGATATCATCAGGATTCCTGTTGTCAATGAAAATGTTGTTGTTCGGGATTCCAGTGGGAAAAAGATCCAATCCCAACTGGTGCCAATACCTGATGCTTATCTTGCTTTAAGAAACTACCACACTCTAGCATACTTGGGAGTGTCTCCAACTGTGAAACCCAATTACTGGCTTGTTTTTTCAGCAACAGTTCCCCCACTTGGTTTTAGCACTTACTATGTATCCTATGGCAAAAAATCAGCTACTATTTCAGATACACATACAGCTTACGAGTCATGGAATAAGAGTGATACACTTACAGTGGGCCTAAATAACTTGAAACTGCGTTATTCTGTGAAGGAAGGGAAACTTACTCAATATATCAACAGAAGAAGCAAGGTCAAGGAATCTATAGACCAGGCATATAAATTTTACATCGGGAATGGAAATGATGGGACAGATACTGCTCAGGCGTCTGGAGCATATGTTTTTCGCCCTGATGGTTCACCAACTCCCATCAGATCCAACGGGAAGTCTCCTCTCACGATTTTTCGGGGACCAATTGTGCATGAAGTGCATCAGAAGATCAACTCATGGATATACCAGACCACCAGACTATACAAGGGGAAAGAGCATGCTGAAGTTGAGTTTGCTGTTGGACCTATACCCATTGATGATCGAGATGGCAAAGAAATTGCAACTGAGATCAAAACAAATCTGGCAAGCGACAAGACCTTCTATACTGATTCTAATGGACGTGATTTCATTGAACGTGTTCGAGACTACAGAGAAGATTGGAACTTGGAAGTAAATCAGCCTGTTGCTGGAAATTATTACCCTATCAACCTTGGGATTTACCTGAAAGATAAAAACAAAGAGTTCTCTATATTGGTGGATAGAGCTGTAGGGGGATCCAGCATCAAAGATGGGCAATTGGAGCTAATGGTTCATAGGAGATTACTTCAGGATGATTCCAGAGGTGTTAATGAGGCACTGAATGAAACAGTTTGCATCCATGATAAGTGTACAGGGTTAACTGTGCTAGGGAAGTACTATTTCAGAATTGATCCTGTAGGAGAGGGTGCTAGATGGCGTCGATCAGTTGGTCAAGAGATATACTCGCCCTTGCTCTTAGCCTTCACAGAGAGTGATGGTCACTGGGGAGATTCTCATGCCACTACCTTCTCAGGAATAGATTCCTCATATAACTTACCAGATAACGTTGCAGTAGTAACCCTCCAGGATCTGGGTGATGGAAAAGTTCTCCTTCGGTTGGCTCACCTATACGAGATTGACGAGGACAAGCTTCTTTCAGTTAAGGCAACTGTAGAAGTTAAAAAGCTGTTTCCCAACAAACAGATAAACAAGATAAGTGAAGTGAGCTTATCAGCTAACCAAGAAAGAGCAGAAATGGAGAAGAAGAGGTTGGTTTGGCAAGTTAAAGGGTCGCCTCAAGAACCTAAAGTACGGAGAGGAGGACCAGTAGACCCAGAAAAGCAAATTGTAGAACTTGCTCCCATGGAAATACGGACTTTTATCATCAATTTTAGGCACTAA 3033 0.427 MENIGLSVWLILLLGCILSSESKYIRYNTTSTIVPGKLNVHLVPHSHDDVGWLKTIDQYYVGSNNSIQGACVQNVLDSLVPALLADKNRKFIYVEQAFFERWWREQSDAIQNIVKGLVNSGQLEFINGGYCMHDEATAHYIDMIDQTTLGHQFLKEEFGVTPRIGWQIDPFGHSAVQAYLLGAEVGFDSLFFARIDYQDRAKRKDEKSLEVVWRGSKSLGSSSQIFSGAFPENYEPPSNFYYEVNDDSPIVQDDVSLFDYNVPERVNEFVAAAISQANITRTNHIMWTMGTDFKYQYAHTWFRQMDKFIHYVNQDGRVHALYSTPSIYTDAKHAANEAWPIKTDDYFPYADRVNAYWTGYFTSRPALKGYVRLMSGYYLAARQLEYFKGKSALSPKTDSLAEALAIAQHHDAVTGTEKQHVANDYAKRLSIGYTEAEEVVAVSLACLTEGKTKTDCSSPQIKFQQCPLLNISYCPASEVDFSNGKNLVVVAYNPLGWKREDIIRIPVVNENVVVRDSSGKKIQSQLVPIPDAYLALRNYHTLAYLGVSPTVKPNYWLVFSATVPPLGFSTYYVSYGKKSATISDTHTAYESWNKSDTLTVGLNNLKLRYSVKEGKLTQYINRRSKVKESIDQAYKFYIGNGNDGTDTAQASGAYVFRPDGSPTPIRSNGKSPLTIFRGPIVHEVHQKINSWIYQTTRLYKGKEHAEVEFAVGPIPIDDRDGKEIATEIKTNLASDKTFYTDSNGRDFIERVRDYREDWNLEVNQPVAGNYYPINLGIYLKDKNKEFSILVDRAVGGSSIKDGQLELMVHRRLLQDDSRGVNEALNETVCIHDKCTGLTVLGKYYFRIDPVGEGARWRRSVGQEIYSPLLLAFTESDGHWGDSHATTFSGIDSSYNLPDNVAVVTLQDLGDGKVLLRLAHLYEIDEDKLLSVKATVEVKKLFPNKQINKISEVSLSANQERAEMEKKRLVWQVKGSPQEPKVRRGGPVDPEKQIVELAPMEIRTFIINFRH 1010
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca03g00278 1010 Gene3D - 598 866 - -
Cca03g00278 1010 Gene3D Glycoside hydrolase 38, N terminal domain 38 318 IPR027291 -
Cca03g00278 1010 SUPERFAMILY Families 57/38 glycoside transferase middle domain 354 449 IPR028995 -
Cca03g00278 1010 Gene3D - 884 1010 - -
Cca03g00278 1010 SUPERFAMILY Galactose mutarotase-like 460 1008 IPR011013 GO:0003824|GO:0005975|GO:0030246
Cca03g00278 1010 Pfam Glycosyl hydrolases family 38 C-terminal domain 604 818 IPR011682 GO:0004559|GO:0006013
Cca03g00278 1010 SUPERFAMILY Glycoside hydrolase/deacetylase 27 351 IPR011330 GO:0005975
Cca03g00278 1010 Gene3D - 465 575 IPR013780 -
Cca03g00278 1010 CDD GH38N_AMII_LAM_like 38 314 - -
Cca03g00278 1010 Gene3D Glycoside hydrolase family 38, central domain 398 454 IPR037094 GO:0004559|GO:0006013
Cca03g00278 1010 PANTHER ALPHA-MANNOSIDASE 12 1009 - -
Cca03g00278 1010 Pfam Alpha mannosidase middle domain 355 446 IPR015341 GO:0004559|GO:0006013
Cca03g00278 1010 Gene3D Glycoside hydrolase family 38, central domain 319 397 IPR037094 GO:0004559|GO:0006013
Cca03g00278 1010 Pfam Glycosyl hydrolases family 38 N-terminal domain 39 350 IPR000602 GO:0004559|GO:0006013
Cca03g00278 1010 PANTHER ALPHA-MANNOSIDASE 12 1009 - -
Cca03g00278 1010 SMART Alpha_mann_mid_2 355 429 IPR015341 GO:0004559|GO:0006013
Cca03g00278 1010 Pfam Glycosyl hydrolases family 38 C-terminal beta sandwich domain 899 1005 IPR041147 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca03g00278 Cca-Chr3 4139294 4148325 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca03g00278 1 922 Glycoside Hydrolase AT5G13980 69.612 0.0 1341
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca03g00278 K01191 - gmx:100798150 1890.55
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca03g00278 03 4139294 4148325 Cca03g00278 03 4139294 4148325 ECH