Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca03g00264 ATGCCTTTTGCGGAAGCTCCTTCCATGTTATGGTTTTTGTTTTTCCAGATAGTATTTATCATAAGCTTGTGCAGTTTCAATGCTGCAGGGATTGAATTGGATGACGAGGAGCTTGCTCACTTTGTGGAGCATGTTGATAAGGATAATAATGGAATTATCACTTTTGAAGAATGGAGAGATTTTCTTCTACTTTACCCTCATGAAGCAACTATTGAAAATATATATCATCATTGGGAGAGGGTGTGCCTTGTTGACATTGGAGAGCAAGCTGTTATTCCTGAAGGCATCAGCAAGCATGTGAACCGGAGCAAATATTTTATTGCCGGGGGAATAGCAGGAGGTATTTCTCGGACAGCAACTGCTCCTCTTGATCGTCTAAAGGTGGTCTTACAAGTTCAAACTGCACGTGCTGCTATTATGCCAGCAGTAAGGAAGATATGGACGCAAGATGGTCTGTCAGGATTTTTCCGAGGAAATGGATTGAATGTTGTGAAGGTAGCGCCAGAAAGTGCCATAAAATTTTATGCTTTTGAAACGTTGAAAAATATAATTAGAGAGGCTCAAGGCAACAAGTCAGATATTGGTACTGCTGGGAGGCTTTTTGCAGGAGGTATGGCTGGTGCAGTCGCACAGGCTGCTATCTATCCACTGGATCTTATTAAAACTAGATTACAGACTTGTGCCTCTGAAGGTGGAAGAGGCCCTAAGCTAGGAACACTTACAAAGAATATATGGGTTCAAGAGGGACCTCGAGCTTTCTACAGAGGGCTTGTTCCATCTCTGCTTGGCATGATTCCTTATGCAGCCATTGATCTCACTGCTTATGATACCTTGAAAGATATGTCCAAGAGATATATTCTTCATGATAATGGTATGTTATTACTGCCGCCACATTATCTCCTGAACTTGCTGATTTTATTTGTTCTAACAGCTTCAATTACAGTAGATATTGACTCTTAA 960 0.4115 MPFAEAPSMLWFLFFQIVFIISLCSFNAAGIELDDEELAHFVEHVDKDNNGIITFEEWRDFLLLYPHEATIENIYHHWERVCLVDIGEQAVIPEGISKHVNRSKYFIAGGIAGGISRTATAPLDRLKVVLQVQTARAAIMPAVRKIWTQDGLSGFFRGNGLNVVKVAPESAIKFYAFETLKNIIREAQGNKSDIGTAGRLFAGGMAGAVAQAAIYPLDLIKTRLQTCASEGGRGPKLGTLTKNIWVQEGPRAFYRGLVPSLLGMIPYAAIDLTAYDTLKDMSKRYILHDNGMLLLPPHYLLNLLILFVLTASITVDIDS 319
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca03g00264 319 PRINTS Mitochondrial carrier protein signature 105 118 IPR002067 GO:0055085
Cca03g00264 319 PRINTS Mitochondrial carrier protein signature 254 272 IPR002067 GO:0055085
Cca03g00264 319 PRINTS Mitochondrial carrier protein signature 209 227 IPR002067 GO:0055085
Cca03g00264 319 PRINTS Mitochondrial carrier protein signature 118 132 IPR002067 GO:0055085
Cca03g00264 319 PRINTS Mitochondrial carrier protein signature 158 178 IPR002067 GO:0055085
Cca03g00264 319 Gene3D - 24 88 - -
Cca03g00264 319 SUPERFAMILY Mitochondrial carrier 98 286 IPR023395 -
Cca03g00264 319 ProSiteProfiles Solute carrier (Solcar) repeat profile. 100 183 IPR018108 -
Cca03g00264 319 SUPERFAMILY EF-hand 26 98 IPR011992 -
Cca03g00264 319 PANTHER MITOCHONDRIAL CARRIER PROTEIN-RELATED 30 290 - -
Cca03g00264 319 ProSiteProfiles EF-hand calcium-binding domain profile. 33 68 IPR002048 GO:0005509
Cca03g00264 319 PANTHER SOLUTE CARRIER FAMILY 25 30 290 - -
Cca03g00264 319 Gene3D Mitochondrial carrier domain 96 315 IPR023395 -
Cca03g00264 319 ProSiteProfiles Solute carrier (Solcar) repeat profile. 194 281 IPR018108 -
Cca03g00264 319 ProSitePatterns EF-hand calcium-binding domain. 46 58 IPR018247 -
Cca03g00264 319 Pfam Mitochondrial carrier protein 193 282 IPR018108 -
Cca03g00264 319 Pfam Mitochondrial carrier protein 103 186 IPR018108 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca03g00264 Cca-Chr3 3905465 3910090 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca03g00264 25 289 EF-hand Containing Proteins AT5G51050 76.030 1.35e-144 415
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca03g00264 K14684 - gmx:100801703 475.707
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca03g00264 03 3905465 3910090 Cca09g02343 09 48731703 48735156 ECH
Cca03g00264 03 3905465 3910090 Cca03g00264 03 3905465 3910090 ECH