Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca03g00237 ATGAATTCCTTCCGCTCCAAACCCGGCAACGCCCGAATCCCCCGCCAGGGCTCCTCCTCCTCCGACACCCACCCCACGCCGCCCCCCGCCGCGCCCCCCGCCTTCCGCTTCCGCTCCCTCTCCAGCTGCGGCCACGCCCGCCCCTGCTCCTCCGCCCGCGCCGTCCAGCGCTCCGCCTCCGCGCGCTACGCCCGCCCAGGCGGCGATGTGATGCTGAACGACATCGTGGGCAACGGCATCTCCGGCATCCTCCACAAGTGGGTGAACTACGGGCGCGGGTGGCGCCCCCGCTGGTTCGTCCTGAACGACGGCGTGCTCTCCTACTTCAAGATCCACGGCCCCGACAAGCTCGTCCTCAACCGCGACGTGGAGTCCGCCTCCAAGGTCATCGGCGAGGAGTCCCTCCgccgcatcaacagccaccgccacagcccctcccgcaaccgcaagccCGTCAGCGAAATCCACCTCATGGTTTGTTCAGTGCGGGAGAACAAGTCAGATGAGAGGAGGTTCTCGGTGTGTACGGGAACAAAGAAGAGGCTGCATTTGAGGGCGGAGAGCAGGGAAGATAGAGCGACGTGGGTGGAGGCAATAATGGCGGTGAAGGACATGTATCCTCGCTTGCCCAACGCTGAGATCATGTCACCCGTCGCCTCCGTCATCATCTCCACCGAGAGGTTGAAAGACCGTCTCTTACTCGAGGGTGTCAGCGAGGCTGCTATTAAGGAATGTGAGGAAATCATGCAAACCGAATTCTCCCAGTTGCACAAACACATTGTCGCTCTCAAGCAGAAGCAGTTGCTACTCATGGACACATTGCGCCATCTAGAGGCAGAGAAGGTTGAGTTGGAGAATGCACTCGTTGAAGACCAAAGGCATTCAAAGGATGGTGATGAAGCAGATCCCTATCAATCAACGCAAGAAAAGTACAGTGGAAGTGACGGTGATTCTTCTGATGGGCCCGATAGGCTTGATAACTCTGACGATGAAGAGGACGCATTCTTTGATACATGTGACATTCTTTCAACAAGTTCTGACCATCCCAGATCCTGCCATGATTCAGAATGTGAGGAGACTAATCCAAATGGGATAGGCCATGAAAAATCAGCGATTGGGTCTGTTGGATTTAACTATCCTGAAGTCAAGAGACGAAAGAAGTTGCCTGACCCTGTTGAGAAAGAGAGTAGCGTCAGCCTATGGTCAATCATAAAAGACAACATCGGGAAGGATCTTACGAAAGTCTGTCTCCCTGTTTACTTTAACGAGCCTATCTCCTCGTTGCAGAAATGTTTTGAAGATCTAGAGTACTCTTATCTTCTAGACCAAGCATATGAATGGGGTAAAATGGGTAACAGTCTAATGAGGATGCTACATGTGGCAGCATTTGCAGTTTCTGGGTATGCTAGCACCAATGGTAGAAGTTGCAAACCATTTAATCCACTGTTGGGTGAGACATATGAAGCAGATTATCCAGACAAAGGAATTCGCTTTATCTCTGAGAAGGTCAGTCATCACCCCATGATTGTTGCATGCCATTGTGAGGGCAGTGGCTGGAAATTTTGGGGTGACAGCAATTTAAAAAGTAAATTTTGGGGTCGTTCAATCCAGCTTGATCCTATTGGTATATTGACTGTAGAATTTGATGACGGGGAAGTCTTCCGTTGGAGCAAGGTAACCACTTCCATTTACAACCTCATTTTAGGGAAACTCTACTGTGACCATTATGGTACAATGAGGGTGGACGGTAACCGTGAGCATTTATGTAAGATCAAATTCAAGGAGCAGTCGATCATTGATAGAAACCCTCACCAGTTCCGCTGCAGGTTAACGGCGTAG 1839 0.5024 MNSFRSKPGNARIPRQGSSSSDTHPTPPPAAPPAFRFRSLSSCGHARPCSSARAVQRSASARYARPGGDVMLNDIVGNGISGILHKWVNYGRGWRPRWFVLNDGVLSYFKIHGPDKLVLNRDVESASKVIGEESLRRINSHRHSPSRNRKPVSEIHLMVCSVRENKSDERRFSVCTGTKKRLHLRAESREDRATWVEAIMAVKDMYPRLPNAEIMSPVASVIISTERLKDRLLLEGVSEAAIKECEEIMQTEFSQLHKHIVALKQKQLLLMDTLRHLEAEKVELENALVEDQRHSKDGDEADPYQSTQEKYSGSDGDSSDGPDRLDNSDDEEDAFFDTCDILSTSSDHPRSCHDSECEETNPNGIGHEKSAIGSVGFNYPEVKRRKKLPDPVEKESSVSLWSIIKDNIGKDLTKVCLPVYFNEPISSLQKCFEDLEYSYLLDQAYEWGKMGNSLMRMLHVAAFAVSGYASTNGRSCKPFNPLLGETYEADYPDKGIRFISEKVSHHPMIVACHCEGSGWKFWGDSNLKSKFWGRSIQLDPIGILTVEFDDGEVFRWSKVTTSIYNLILGKLYCDHYGTMRVDGNREHLCKIKFKEQSIIDRNPHQFRCRLTA 612
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca03g00237 612 Coils Coil 274 294 - -
Cca03g00237 612 MobiDBLite consensus disorder prediction 344 369 - -
Cca03g00237 612 PANTHER OSBP(OXYSTEROL-BINDING PROTEIN)-RELATED PROTEIN 1C 18 607 - -
Cca03g00237 612 SMART PH_update 78 206 IPR001849 -
Cca03g00237 612 PANTHER OXYSTEROL-BINDING PROTEIN-RELATED 18 607 IPR000648 GO:0008289
Cca03g00237 612 ProSiteProfiles PH domain profile. 77 204 IPR001849 -
Cca03g00237 612 MobiDBLite consensus disorder prediction 1 33 - -
Cca03g00237 612 MobiDBLite consensus disorder prediction 288 330 - -
Cca03g00237 612 MobiDBLite consensus disorder prediction 1 24 - -
Cca03g00237 612 SUPERFAMILY PH domain-like 80 213 - -
Cca03g00237 612 Gene3D - 78 206 IPR011993 -
Cca03g00237 612 MobiDBLite consensus disorder prediction 347 363 - -
Cca03g00237 612 Pfam Oxysterol-binding protein 399 608 IPR000648 GO:0008289
Cca03g00237 612 Gene3D - 485 612 - -
Cca03g00237 612 SUPERFAMILY Oxysterol-binding protein-like 394 610 IPR037239 -
Cca03g00237 612 Pfam PH domain 80 202 IPR001849 -
Cca03g00237 612 MobiDBLite consensus disorder prediction 288 304 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca03g00237 Cca-Chr3 3481153 3491151 Transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca03g00237 K20456 - gmx:100807703 963.755