Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca03g00233 ATGGCGGGGCCTTCCGATTCAAAGGTTGAATTCCTGGCGTGGCTCTCTCAAGTGATGAGAGGTCTCTGCTCGCGTTCCGACGAGGATGACCGAGTCTTCGTCAACGCCGACGCCGCTCATACCAAGCCTACCACCAACCACTCTGCCGTCGCGCCGCAGAGAATGGAGAGGAACGTTCCGGACCCTTCTAGGACCTACGGCGGACCTTCTGCCGCGGTGGAGGAACACTTTTACGATGGAATCCCGTTCTACGTCGAGGACTCTTCGTCTAACAAGTCTAGGTCAAAGGTCTCAGAGGTGAGTTTACGCTTGGGCAGAGCTGGATTTGGGAAGGCAGTAGAGGTTTTGGACACCCTTGGGAGCAGCATGACAAATTTAAATGCTAGCAGTGGGTTTGTTTCTGGAGCTGCGATAAAGGGGAATGAAATTTCTATCTTAGCATTTGAGGTTGCTAACACAATTGTCAAAGGTTTTAATCTTCTGCAATCTCTTTCCCCAAAAAGTATTAGGCATTTAAAAGAAGAGGTACTTCTTTCTCCTGCTGTGCAAGATTTAGTATCAAAGGACATGGATGAACTTCTGAGGATTGTGGCAGCAGACAAGAGGCAGGAATTGAAAGTTTTTTCTGATGAGGTGATTCGTTTTGGAAATCGTTCAAAGAATCCTCAATGGCACAACTTAGACCGTTACTTTGAGAAGGTTAGCAGAGAATTAAATGCTCAAAGACTGTCAAGAGATGAGGCAGAATCAATAATGCAACAATTGATGACTTTGGTTCAGTTTACAGCTGAATTGTACCATGAATTACATGCTTTGGATAGATTTGAACAAGATATTCAGCAGAAATGTGAGGAGGATGATCAAAGAGGTGATAGCCTTGCATTCTTGAAGGCAGAAATTAAAAGTCAAAAGAAGCAAATTAGACATCTAAAGAAAAAATCACTCTGGTCTAGAAGTTTAGAGGAGGTTATGGAGGAACTTGTAGACATTGTCCATTTTTTGCATTTGGAGATTAGCAATGCCTTTGGCAATGCAGATGGCCACAAACCATTAATTGGACACATGAGCAATCGACAAAGATTGGGCCATGCAGGCCTCGCTTTGCATTATGCAAATATAGTGCTTCAAATTGATACTCTTGTAGCTAGATCCTCTATGCCTCCTGCAAATACTAAGGATGCATTATATCAAAGCTTGCCTCCTAATATAAAATTAGCTTTGCGCTCCAAATTGCCATCCCTTCGTGTTGTCGAAGAGCTAACTATAGCAGATATCACAGATGAGATGGAGAAAACATTACATTGGTTGGCCCCCATGGCCACTAACACATCCAAAGCTCATCATGGCTTTGGTTGGGTAGGGGAGTGGGCAAACACAGGGTCTGAGGTAAACAGGAAGAGTGGTGTAATGCAGATTGAGACATTCCACCATGCAGACAAAGACAAAGTGGAATATTATATTCTTGAACTTCTCTTGTGGCTTCATCGCATGGTGATCAGAAGTAAGGCTGTTAGTGATGCTAGCAAAGTAAGGTCTGCCATCAAGTCCCCTGTTGGCGCTGCCTTGCAAAAGACAAATAAGCAGTCTATAAATGCAGCAACATTATCATTATTAACAATCGACGAGCAAAACATGCTGCAGGATGTAAAAAACAAAATATCAGCTAGACGGATAAGTAAAAGCTTGGACTTTGACAGTGCGAATATTAGATTCAGGGAGAACTGTAGATTGACCAAGAGTAGAAGTCATTCATCAAGTAAAAGCAAGGAAATGTCTTTTAATAGGATTTTGTCTAAGCTTCCAGTGATTGATTTTGATATTGACAAAGAAAGAGCATTGAACGTGATCGACAGACTGGATGGGGTGAGATAA 1872 0.4279 MAGPSDSKVEFLAWLSQVMRGLCSRSDEDDRVFVNADAAHTKPTTNHSAVAPQRMERNVPDPSRTYGGPSAAVEEHFYDGIPFYVEDSSSNKSRSKVSEVSLRLGRAGFGKAVEVLDTLGSSMTNLNASSGFVSGAAIKGNEISILAFEVANTIVKGFNLLQSLSPKSIRHLKEEVLLSPAVQDLVSKDMDELLRIVAADKRQELKVFSDEVIRFGNRSKNPQWHNLDRYFEKVSRELNAQRLSRDEAESIMQQLMTLVQFTAELYHELHALDRFEQDIQQKCEEDDQRGDSLAFLKAEIKSQKKQIRHLKKKSLWSRSLEEVMEELVDIVHFLHLEISNAFGNADGHKPLIGHMSNRQRLGHAGLALHYANIVLQIDTLVARSSMPPANTKDALYQSLPPNIKLALRSKLPSLRVVEELTIADITDEMEKTLHWLAPMATNTSKAHHGFGWVGEWANTGSEVNRKSGVMQIETFHHADKDKVEYYILELLLWLHRMVIRSKAVSDASKVRSAIKSPVGAALQKTNKQSINAATLSLLTIDEQNMLQDVKNKISARRISKSLDFDSANIRFRENCRLTKSRSHSSSKSKEMSFNRILSKLPVIDFDIDKERALNVIDRLDGVR 623
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca03g00233 623 Pfam Protein of unknown function (DUF668) 360 444 IPR007700 GO:0045927
Cca03g00233 623 PANTHER OS01G0873900 PROTEIN 12 623 IPR045021 GO:0045927
Cca03g00233 623 Pfam Domain of unknown function (DUF3475) 145 201 IPR021864 GO:0045927
Cca03g00233 623 Coils Coil 293 313 - -
Cca03g00233 623 PANTHER DUF668 FAMILY PROTEIN 12 623 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca03g00233 Cca-Chr3 3420301 3428683 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca03g00233 - - gmx:100779607 1008.82
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca03g00233 03 3420301 3428683 Cca03g00233 03 3420301 3428683 ECH