Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca03g00227 ATGTGGCGTCGAAGCTTCTCCAGACTCCCCCTCCGCGCTTCGCCTTTAGGGTTTTTCACGCGATCGCTCTCGTCCGCGCCGGGGAAGAGGTTCGCCGCGCTCTGGGGAAACGGCGATTACGGCAGATTGGGTCTCGGCAACTTGGATTCGCAATGGAACCCCGCCGTTTGCCCTGCCTTCCGCAACCATACCCTTAAAGCCATTGCTTGTGGCGGTGCTCACACCCTCTTCTTAACAGACGATGGATGCGTTTATGCTACTGGACTTAATGATTTTGGACAGCTTGGTATATCAGAGAGTAAACACTACTCGGTGGAGCCAGTTCGTGTTCTTGGAGAGAAGAAAATTGTGCAGATCTCTGCTGGTTATAATCATTCTTGTGCGATAACAGTGGATGGAGAACTATACATGTGGGGAAAGAATGCAAGTGGGCAGCTTGGACTCGGAAAAAGGGCTCCAAACATAGTTCCTTTGCCAACTAAAGTGGAATACCTGGATGGAATCAACATTAAAATGGCAGCTCTGGGTTCAGAGCACTCGGTGGCTATTAGTGATGGAGGAGAAGCCTTTAGTTGGGGAATGGGAGTGTCTGGTAGACTTGGTCATGGTCATGAGTCAAACATCCTAGGATTCTTCAAAAGTTACAGTGAGTATACCCCAAGGCTTATAAAGGATCTTGAAGGAATCAAGGTAAAATATGTAGCTGCTGGGTTGCTAAATTCAGCTTGTACTGATGAAAATGGTTCTGTTTTTATATTCGGTGAAAGAGGGATTGACAAATTGCGTTTAAAGGAAATGAGCAATGCAACAAAACCATCCTTGATTGGTGAACTTCCATACTCAAAAGAAGTTGCTTGTGGTGGCTACCACACGTGTGTCTTGACAAATTCTGGTGAGCTTTATACTTGGGGTTCAAATGAAAATGGCTGCCTTGGTATTGGATCCTCAGATGTCATTCATCTACCTCAAAAGGTTCAAGGGCCATTCTTGAAGTCGTCTGTTAGCCATGTTTCTTGTGGTTGGAAGCATACTGCAGCCATTTCTGAAGGAAGAGTCTTCACGTGGGGCTGGGGAGGTTCCAATGGGACTTTCTCTGAAGTTGGACATTCTTCGAGTGGACAATTGGGCCATGGAAGTGATGTGGACTATATAAATCCTACAAGAGTTTGCTTTGGAGAAGACGTGAAAGCATTGCAAGTTTCATGTGGGTTCAATCATACTGGTGCTATACTTGAATATGCCTAG 1245 0.461 MWRRSFSRLPLRASPLGFFTRSLSSAPGKRFAALWGNGDYGRLGLGNLDSQWNPAVCPAFRNHTLKAIACGGAHTLFLTDDGCVYATGLNDFGQLGISESKHYSVEPVRVLGEKKIVQISAGYNHSCAITVDGELYMWGKNASGQLGLGKRAPNIVPLPTKVEYLDGINIKMAALGSEHSVAISDGGEAFSWGMGVSGRLGHGHESNILGFFKSYSEYTPRLIKDLEGIKVKYVAAGLLNSACTDENGSVFIFGERGIDKLRLKEMSNATKPSLIGELPYSKEVACGGYHTCVLTNSGELYTWGSNENGCLGIGSSDVIHLPQKVQGPFLKSSVSHVSCGWKHTAAISEGRVFTWGWGGSNGTFSEVGHSSSGQLGHGSDVDYINPTRVCFGEDVKALQVSCGFNHTGAILEYA 414
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca03g00227 414 Pfam Regulator of chromosome condensation (RCC1) repeat 132 183 IPR000408 -
Cca03g00227 414 Pfam Regulator of chromosome condensation (RCC1) repeat 81 129 IPR000408 -
Cca03g00227 414 Pfam Regulator of chromosome condensation (RCC1) repeat 35 78 IPR000408 -
Cca03g00227 414 Pfam Regulator of chromosome condensation (RCC1) repeat 297 347 IPR000408 -
Cca03g00227 414 Pfam Regulator of chromosome condensation (RCC1) repeat 187 238 IPR000408 -
Cca03g00227 414 Pfam Regulator of chromosome condensation (RCC1) repeat 368 410 IPR000408 -
Cca03g00227 414 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 350 413 IPR000408 -
Cca03g00227 414 PANTHER OS11G0545800 PROTEIN 28 414 - -
Cca03g00227 414 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 133 186 IPR000408 -
Cca03g00227 414 Gene3D - 157 413 IPR009091 -
Cca03g00227 414 Gene3D - 28 156 IPR009091 -
Cca03g00227 414 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 298 350 IPR000408 -
Cca03g00227 414 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 248 297 IPR000408 -
Cca03g00227 414 PANTHER UBIQUITIN-PROTEIN LIGASE E3A-RELATED 28 414 - -
Cca03g00227 414 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 82 132 IPR000408 -
Cca03g00227 414 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 187 247 IPR000408 -
Cca03g00227 414 SUPERFAMILY RCC1/BLIP-II 34 411 IPR009091 -
Cca03g00227 414 PRINTS Chromosome condensation regulator RCC1 signature 31 47 IPR000408 -
Cca03g00227 414 PRINTS Chromosome condensation regulator RCC1 signature 65 78 IPR000408 -
Cca03g00227 414 PRINTS Chromosome condensation regulator RCC1 signature 84 100 IPR000408 -
Cca03g00227 414 PRINTS Chromosome condensation regulator RCC1 signature 133 149 IPR000408 -
Cca03g00227 414 PRINTS Chromosome condensation regulator RCC1 signature 173 189 IPR000408 -
Cca03g00227 414 PRINTS Chromosome condensation regulator RCC1 signature 189 203 IPR000408 -
Cca03g00227 414 PRINTS Chromosome condensation regulator RCC1 signature 287 305 IPR000408 -
Cca03g00227 414 PRINTS Chromosome condensation regulator RCC1 signature 345 366 IPR000408 -
Cca03g00227 414 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 30 81 IPR000408 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca03g00227 Cca-Chr3 3339475 3346985 Transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca03g00227 - - vun:114196144 766.148
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca03g00227 03 3339475 3346985 Cca03g00227 03 3339475 3346985 ECH