Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca03g00224 ATGGACAGGAGGAGTTGGCTATGGCGCAGGAAGTCTTCTGAGCAAAGTCCAGGTGAAACTGAGAGTTCTGGTTCAATGTCATCTCATTTAGAAAGATTCTCTGATGATCAGGTATACCCTACCGAAACTACTCCATCTCCAGAAGTCACGTGTGAGGCTGCACCAAATGATGAAGAAGCTACTGATGTGAAGACTCTAACAGAAAAGTTATCTATTGCTCTCTTAAACTCTAGTGCAAAAGAAGAATTGGTAAAGCAGCATGCTAAGGTTGCCGAAGAAGCTGTCTCAGGCTGGGAGAAGGCTGAAAATGAAGTGTTGATTTTAAAACAACAACTTGCCGCTTCAAAACAGAAAAACTCAGTTCTTGAAAACCAAGTTAGTCATCTTAATGGGGCACTCAAGGAATGTATGAGGGAGCTTCGACAAGCTAAAGAAGAACAAGATCAAAATATTCATGAAGCTGTTGTTGGTAACTCTTGTGGTGTATCAGCTCGTTCCGATCTTCACCAGAGGCTTGAAGATTTGGAGAAAGAGAATTCCAATCTTAAAATTGAGCTACAATCTCGACTCGAGGAACTAGAATTGAGAACCATTGAGAGGGATTTGAGTACTCAAGCTGCTGAAACAGCAAGCAAGCAACATTTGGAGAGTATAAAAAAGGTGACTAAGCTTGAATCCGAGTGCCGTAGACTGAAAGCTATGACTCGCAAAACATTCTCTGCTAATGATCATAGGTCTTTGACTGCTTCTTCAGTTTATGTAGAGTCTTTTACTGATAGCATGTCAGATATTGGAGAGAGGCAACTGGTAGTTGAAAGTGATATGCGGAAATTAGGAGGCTGGGATGAGAATGAAAGCGAGCCAAGCCACTATGACTCATGGTCATCAACTTTAATCTCAGAACTTGATCAAGTTAAGAGTGAAAACACTGCTGAAAAAAACTCTATAGTCTTTTCAACTGAGATCAATCTGATGGATGATTTTCTTGAAATGGAAAGGCTTGCTGCATTGCCAGATACCGAAAGTGTAAGCGGTTTTCCTGTGGTAGGTACTGCATCTGACCAACTTAATGTTGGCCATGGCACAAGGAATGCTGAAGTGGAAGCTATGGTTCAAAAGAATGCTGCATTGGAAAAGAAACTAGAGAAAATGGAGGCTGATAAACATGAGCTAGAGATGGATCTAACCAAGTGCCAAAAGCAGCTTGAAGCATCACTGAGTAGGGTGACGGAAATGGAGTTGGAGGTAGCAGAGCTTCAAACTAAGTTAGTTCTTGCAAACAAATCAAATGAAGAAGTATTTGAAGAACTCAAAGCAACTCATAAAAAGAAAGAGATAGCTGAGTCAAAACTCAGAGTTGCTCAAACTGAAGCTGAAGAATTGGTTTCAAAAATTTACTCATTAGAGGAAGAGATCGAGAAAGAGCGAGCTTTCTCTGCTGAGAATTTGGCCAGGTGTGGGAAGTTGGAGGATGAGCTCTTGAGAATGAACCATGAAACTCAACTCCAGCAAAACACTGAGATTATGCCCGGAGAAAGTGTTAATAGTGAGATGAAGCAGGAGAAGGAACTAGCATTGGCTGCTAATAAATTTGCTGAGTGCCGGAAAACCATCGAGTCTCTAGGACTGCAGTTGAAGTCCCTTGCAACATTGGAAGACTTAATACATGATTCAGAGAGCCCTGTGGAGTTAACTTGTGAAGTTACACCAGGCTCCCAAAATGGTGGTGTGCAGCTGAAGAAGTTACATAGTGATGATTTGAGTTTGTCCAAAGGAGATTCTGAATCATCATCAGTTACACTAAATCCATCTATTACCCATGAAAAAGCCCGAAATAGTTTTGGTAGGTTCAACCCACGAAGCAAGAGTGTAAGCAGAACAAGAGGCCACTAA 1893 0.4142 MDRRSWLWRRKSSEQSPGETESSGSMSSHLERFSDDQVYPTETTPSPEVTCEAAPNDEEATDVKTLTEKLSIALLNSSAKEELVKQHAKVAEEAVSGWEKAENEVLILKQQLAASKQKNSVLENQVSHLNGALKECMRELRQAKEEQDQNIHEAVVGNSCGVSARSDLHQRLEDLEKENSNLKIELQSRLEELELRTIERDLSTQAAETASKQHLESIKKVTKLESECRRLKAMTRKTFSANDHRSLTASSVYVESFTDSMSDIGERQLVVESDMRKLGGWDENESEPSHYDSWSSTLISELDQVKSENTAEKNSIVFSTEINLMDDFLEMERLAALPDTESVSGFPVVGTASDQLNVGHGTRNAEVEAMVQKNAALEKKLEKMEADKHELEMDLTKCQKQLEASLSRVTEMELEVAELQTKLVLANKSNEEVFEELKATHKKKEIAESKLRVAQTEAEELVSKIYSLEEEIEKERAFSAENLARCGKLEDELLRMNHETQLQQNTEIMPGESVNSEMKQEKELALAANKFAECRKTIESLGLQLKSLATLEDLIHDSESPVELTCEVTPGSQNGGVQLKKLHSDDLSLSKGDSESSSVTLNPSITHEKARNSFGRFNPRSKSVSRTRGH 630
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca03g00224 630 MobiDBLite consensus disorder prediction 591 622 - -
Cca03g00224 630 MobiDBLite consensus disorder prediction 1 62 - -
Cca03g00224 630 Coils Coil 437 471 - -
Cca03g00224 630 PANTHER FILAMENT-LIKE PLANT PROTEIN 4 163 620 - -
Cca03g00224 630 PANTHER FILAMENT-LIKE PLANT PROTEIN 4 1 165 - -
Cca03g00224 630 Coils Coil 367 429 - -
Cca03g00224 630 Pfam Filament-like plant protein, long coiled-coil 366 550 IPR008587 -
Cca03g00224 630 Pfam Filament-like plant protein, long coiled-coil 285 343 IPR008587 -
Cca03g00224 630 Pfam Filament-like plant protein, long coiled-coil 166 237 IPR008587 -
Cca03g00224 630 Pfam Filament-like plant protein, long coiled-coil 80 159 IPR008587 -
Cca03g00224 630 PANTHER FILAMENT-LIKE PLANT PROTEIN 1 165 - -
Cca03g00224 630 PANTHER FILAMENT-LIKE PLANT PROTEIN 163 620 - -
Cca03g00224 630 MobiDBLite consensus disorder prediction 1 16 - -
Cca03g00224 630 Coils Coil 165 196 - -
Cca03g00224 630 MobiDBLite consensus disorder prediction 570 630 - -
Cca03g00224 630 MobiDBLite consensus disorder prediction 17 50 - -
Cca03g00224 630 Coils Coil 98 153 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca03g00224 Cca-Chr3 3258167 3262252 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca03g00224 - - gmx:100810372 936.406
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca03g00224 03 3258167 3262252 Cca03g00224 03 3258167 3262252 ECH