Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca03g00214 ATGGAAAAGTGGGTGGCTTTGGTGATGCTGTTAGTGTCGTGGAAAATAAGGGAAGGTTTTGTTGTTAACGCTGAAGTCACATACGATGGAAGATCCCTCATCATTGACGGCCACAGAAATATTCTCTTCTCCGGTTCTATTCATTATCCTCGCAGCACTCCTCAGATGTGGCCAGATTTGATAGCGAAAGCCAAACAAGGAGGACTGGACGTGATTCAGACCTATGTCTTTTGGAATCTACATGAGCCCCAACCAGGAGAGTATGATTTCAGCGACAGATATGACTTGGTGAGATTCATAAAGGAAATCCAAGCTCAAGGGCTCTATGTTTGCCTCAGAATTGGACCTTTCATCGAAAGTGAATGGACTTATGGGGGATTTCCTTTCTGGTTACACGATGTTCCTGGTATTGTCTATCGAACTGATAATGAACCATTCAAGTTCTACATGCAAAATTTTACGACAAAAATTGTGAACATGATGAAAGAAGAGGGTTTATATGCTTCGCAAGGAGGACCAATTATATTGTCACAGATTGAAAACGAATACCAAAACATCCAAAAGGCGTTCGGCCCAGCAGCATCGCGGTATGTTAAATGGGCCGCAAGTATGGCAGTGGGCCTTAACACTAGCGTACCATGGATTATGTGCAAGCAAACGGACGCTCCTGACCCTGTGATCAATACATGCAACGGAATGAGATGTGGAGAAACCTTTACCGGACCAAATTCTCCCAATAAACCTGCCTTGTGGACTGAGAATTGGACCTCTTTCTATCAAGTGTATGGTGGACTGCCATACATAAGGTCTGCCGAAGATATTGCATTTCATGTCACCCTTTTCATTGCAAGAAATGGAAGCTATGTCAACTATTACATGTACCATGGAGGAACTAACTTTGGAAGAACAGCCTCTGCTTATGTTATAACAGGCTATTATGATCAAGCCCCACTTGATGAATATGGTTTGTTCAGGCAACCCAAGTGGGGACATCTCAAGCAGTTACATGCTGTAATCAAGTCTTGCTCTACCACTTTATTACAAGGAGCTCAGAGAAACTTCTCTTTAGGTCAACTACAGGAAGGTTATGTCTTTGAAGAAGAAAATGGAGAATGTGTTGCATTCCTCATAAACAATGATATAAAAAATAAGGTTACAGTGCAATTCCGCAACATATCATACGAATTGCTCCCCAAGTCAATAAGTATCTTACCAGATTGTCAAAATGTGACTTTCAATACTGCAAATGTAAATACAACAAGCAACAGAAGGATCATAAGTCCTAAACAAAACTTTAGCTCAGTGGATGATTGGAAGCAATTCCAAGATGTCATTCCAAACTTTGATGACACCTCACTGAGATCAAACTCATTACTTGAGCAAATGAATACAACCAAAGACAAATCAGATTACCTTTGGTATACTCTTAGGTTAGAACATAATTTATCCTGCAGCGAACCAACACTTAGTGTTCAATCTGCTGCTCATGTTGCTCATGCTTTTATGAACAACATATACATAGGAGGGGAACATGGGAATCATGATGTGAAAACATTCTCCTTAGAGCTACCGGTTACAGTAAATGAAGGGACAAACAACCTTTCTATACTCAGCGTTATGGTTGGACTTCCGGATTCAGGGGCATTTCTTGAAAGAAGGTTTACTGGTTTAATTAGTGTGGAACTTCAGTGCAGTGAAGACGAGTCTCTTAATTTGACGAATTCTACGTGGGGTTATCAGGTTGGATTGCTGGGGGAGCAATTACAAGTATATAAAGAACAAAATAACAGTGATATTCGATGGAGTCAACTGGGAAATTTTAGGGAACAAACGCTCGTTTGGTACAAGACTACATTTGACGCACCAGAGGGAGATGAGCCTGTTGCATTGGACCTAAGCTCGATGGGAAAAGGTGAGGCATGGGTAAATGGACAAAGCATTGGTCGGTATTGGGTCTTGTTTCATGATTCCAAAGGCCAACCTTCACAATCACTGTATCACGTGCCTCGGTCTTTCCTTAAGGACTCTGGAAACGTTTTGGTTTTGGTGGAGGAAGGTGGTGGGAACCCTCTTGGTGTCTCCTTGAACACTGTTTCGGTCACAGATTTACAAGATAAATTTTCTAAATTACCATTCCCCTCTTCTGTTTAG 2151 0.4147 MEKWVALVMLLVSWKIREGFVVNAEVTYDGRSLIIDGHRNILFSGSIHYPRSTPQMWPDLIAKAKQGGLDVIQTYVFWNLHEPQPGEYDFSDRYDLVRFIKEIQAQGLYVCLRIGPFIESEWTYGGFPFWLHDVPGIVYRTDNEPFKFYMQNFTTKIVNMMKEEGLYASQGGPIILSQIENEYQNIQKAFGPAASRYVKWAASMAVGLNTSVPWIMCKQTDAPDPVINTCNGMRCGETFTGPNSPNKPALWTENWTSFYQVYGGLPYIRSAEDIAFHVTLFIARNGSYVNYYMYHGGTNFGRTASAYVITGYYDQAPLDEYGLFRQPKWGHLKQLHAVIKSCSTTLLQGAQRNFSLGQLQEGYVFEEENGECVAFLINNDIKNKVTVQFRNISYELLPKSISILPDCQNVTFNTANVNTTSNRRIISPKQNFSSVDDWKQFQDVIPNFDDTSLRSNSLLEQMNTTKDKSDYLWYTLRLEHNLSCSEPTLSVQSAAHVAHAFMNNIYIGGEHGNHDVKTFSLELPVTVNEGTNNLSILSVMVGLPDSGAFLERRFTGLISVELQCSEDESLNLTNSTWGYQVGLLGEQLQVYKEQNNSDIRWSQLGNFREQTLVWYKTTFDAPEGDEPVALDLSSMGKGEAWVNGQSIGRYWVLFHDSKGQPSQSLYHVPRSFLKDSGNVLVLVEEGGGNPLGVSLNTVSVTDLQDKFSKLPFPSSV 716
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca03g00214 716 Gene3D Glycosidases 21 343 - -
Cca03g00214 716 PANTHER BETA-GALACTOSIDASE RELATED 23 709 IPR001944 GO:0004553|GO:0005975
Cca03g00214 716 SUPERFAMILY (Trans)glycosidases 25 342 IPR017853 -
Cca03g00214 716 SUPERFAMILY Galactose-binding domain-like 576 700 IPR008979 -
Cca03g00214 716 ProSitePatterns Glycosyl hydrolases family 35 putative active site. 171 183 IPR019801 GO:0004553|GO:0005975
Cca03g00214 716 Gene3D - 575 707 - -
Cca03g00214 716 Gene3D - 437 574 - -
Cca03g00214 716 SUPERFAMILY Galactose-binding domain-like 401 556 IPR008979 -
Cca03g00214 716 Pfam Glycosyl hydrolases family 35 32 337 IPR031330 -
Cca03g00214 716 Pfam Beta-galactosidase jelly roll domain 605 683 IPR025300 -
Cca03g00214 716 PANTHER BETA-GALACTOSIDASE 6 23 709 - -
Cca03g00214 716 Pfam Beta-sandwich domain in beta galactosidase 346 417 IPR041392 -
Cca03g00214 716 PRINTS Glycosyl hydrolase family 35 signature 36 53 IPR001944 GO:0004553|GO:0005975
Cca03g00214 716 PRINTS Glycosyl hydrolase family 35 signature 57 75 IPR001944 GO:0004553|GO:0005975
Cca03g00214 716 PRINTS Glycosyl hydrolase family 35 signature 112 131 IPR001944 GO:0004553|GO:0005975
Cca03g00214 716 PRINTS Glycosyl hydrolase family 35 signature 169 184 IPR001944 GO:0004553|GO:0005975
Cca03g00214 716 PRINTS Glycosyl hydrolase family 35 signature 250 265 IPR001944 GO:0004553|GO:0005975
Cca03g00214 716 PRINTS Glycosyl hydrolase family 35 signature 287 302 IPR001944 GO:0004553|GO:0005975
Cca03g00214 716 PRINTS Glycosyl hydrolase family 35 signature 306 322 IPR001944 GO:0004553|GO:0005975
Cca03g00214 716 PRINTS Glycosyl hydrolase family 35 signature 610 624 IPR001944 GO:0004553|GO:0005975
Cca03g00214 716 PRINTS Glycosyl hydrolase family 35 signature 637 653 IPR001944 GO:0004553|GO:0005975
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca03g00214 Cca-Chr3 3188110 3195425 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca03g00214 6 701 Glycoside Hydrolase AT5G63800 63.338 0.0 960
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca03g00214 - - gmx:100818637 1335.86
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca03g00214 03 3188110 3195425 Cca03g00214 03 3188110 3195425 ECH