Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca03g00186 ATGGAATTAAGTGGTTCCACTCTAGTACACTACCCTTCATCACAGCCCCAAGAAGAGAATGAGGGGTTAGTGTTTGACTCAACCAACTTGCTTCAAATGCAAGGTGACATGCCCAAAGAGTTCCTTTGGCCTTCTGGGGACTTGGTCAACACCACCCAAGAGGAGCTGAAGGAACCCCTTGTGGACTTAGGCATCATGAGAAATGGTGATGAGGGTGCCATTGCCAATGCTGCAGAGCTTGTGAGGAATGCTTGCTTGAAGCATGGCTTCTTCCAAGTTGTCAACCATGGTGTGGACCCAAATCTCATTGATGCTGCTTATCAACAACTTGACTCTATTTTTAAGCTCCCAATTGCCAGAAAACTTAGTGCCAAAAGGAAACCTGGTGGTGTCTCTGGATACTCTGGGGCTCATGCAGATCGTTACTCCTCCAAATTGCCATGGAAAGAGACTTTTTCTTTCCTTTATGCCCACCAAAGCATCTCCAACTCCCAAATTGTTGACTACTTTGTGTCTGTCTTGGGGGAGGACCTTCATTACACAGGATTGGTGTATCAAAAGTACTGTGAAGCAATGAAGGAGTTATCTTTGGTAATTATGGAGCTGTTGGCGATTAGTTTGGGAGTGGATCGAGAGCATTATAGAAGATTTTTTCAAGATGGTGACTCAATAATGAGgtgcaactattatccaccttgcaacagtgcgaaccttaccttaggcactggccctcacactgatccaacttcattaaccattcttcaccaagaccaagttggaggcttagaagtttttgtagataacaaatggctcgctgttcgcccaagatctgaagcattagtcataaacattggtgacactttcatgGCATTGTCAAATGGAAGATACAAGAGTTGTCTACACAGGGCATTGGTGAACACATACAAGGAGAGAAGGTCATTGGTATACTTTGTGTGTCCAAGAGAAGACAAGGTGGTGAGGCCCCCAGAGAATCTCTTATGCACAAATAATGAAGAAAGGAAGTACCCTGATTTCACATGGTCCAATTTGTTTGAATTCACTCAGAAGCATTATAGGGCTGATGTTACCACTCTCCAAAGCTTCTTTCAGTGGCAATGCCAATGCTCTTCCAACTTTATCTAG 1143 0.3666 MELSGSTLVHYPSSQPQEENEGLVFDSTNLLQMQGDMPKEFLWPSGDLVNTTQEELKEPLVDLGIMRNGDEGAIANAAELVRNACLKHGFFQVVNHGVDPNLIDAAYQQLDSIFKLPIARKLSAKRKPGGVSGYSGAHADRYSSKLPWKETFSFLYAHQSISNSQIVDYFVSVLGEDLHYTGLVYQKYCEAMKELSLVIMELLAISLGVDREHYRRFFQDGDSIMRCNYYPPCNSANLTLGTGPHTDPTSLTILHQDQVGGLEVFVDNKWLAVRPRSEALVINIGDTFMALSNGRYKSCLHRALVNTYKERRSLVYFVCPREDKVVRPPENLLCTNNEERKYPDFTWSNLFEFTQKHYRADVTTLQSFFQWQCQCSSNFI 380
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca03g00186 380 PANTHER GIBBERELLIN 20 OXIDASE 1-B-LIKE 21 375 - -
Cca03g00186 380 MobiDBLite consensus disorder prediction 1 20 - -
Cca03g00186 380 ProSiteProfiles Fe(2+) 2-oxoglutarate dioxygenase domain profile. 220 320 IPR005123 -
Cca03g00186 380 SUPERFAMILY Clavaminate synthase-like 34 360 - -
Cca03g00186 380 Pfam 2OG-Fe(II) oxygenase superfamily 222 320 IPR044861 -
Cca03g00186 380 PANTHER 2-OXOGLUTARATE (2OG) AND FE(II)-DEPENDENT OXYGENASE SUPERFAMILY PROTEIN-RELATED 21 375 - -
Cca03g00186 380 PRINTS Isopenicillin N synthase signature 81 98 - -
Cca03g00186 380 PRINTS Isopenicillin N synthase signature 245 266 - -
Cca03g00186 380 PRINTS Isopenicillin N synthase signature 280 306 - -
Cca03g00186 380 Pfam non-haem dioxygenase in morphine synthesis N-terminal 59 157 IPR026992 -
Cca03g00186 380 Gene3D - 30 353 IPR027443 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca03g00186 Cca-Chr3 2766543 2772686 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca03g00186 36 359 Glycosyltransferase AT5G59530 27.859 3.58e-31 120
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca03g00186 K05282 - gmx:100816834 669.463