Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca03g00184 ATGGCTTTGGGGAAATATACTAGAGTAGATGGTAGAAGATCATCGAGTTGGTGTTCGACGGTGACTGTTGTCGTGTTTGTGGCTCTATGCTTGGTTGGTGTTTGGATGATGACATCATCTTCAGTTGTCAATGTGCGTAGTGGAGATCAGGCTCAGGAGAGTAATACTGAAGTGAAAGAAAAAACCGAGGTGAAAGAATCGGTGAGTGAGATCAGCAATAGCAATAGTAGGCAGTTTGAAGATAACCCAGGTGATTTGCCCGAGGATGCAACCAAGGGGGACAGCAATGTGACCTCTGAAGATGACTCGAACCCTTCAGATAAACAAGAAGAGAAGTTGGAGGAAAATCCTGTAGAGAAGTCTTCTGAAGATGCAAAGACAGAAGACGGGGATAAGAAAATTGAGGAGGAAGGTTCTAATACAGAAAATGAATCAAACTCAGACTCTGCGGAAAGTAACAAAGACAGTGACGAGACTTCCACCAAGGAATCTGATTCCGAAGAGAATGAAAAGAAATCTGAATCAGATGATAACAAGAAGTCTGATTCAGATGAAAGTGAAAAGCAATCTGATAACTCTGATGAAACAACAGATAGTAAGATAGAGGAAAAGGTGGAAGAAAATGATAACAAGGAATCTGATGAAAACTCTAGTGAGAAGAATACAAATGATGATACCAAACAGCAGAGTTCAAATGAGGTATTCCCTTCTGGGGCTCAGTCAGAGCTTCAAGATGAAAGTACGACACAAACTGGGTCTTGGTCAACTCAGGCAGCAGAGTCTAAGAATGAAAAGGAGTCTCAAGAATCCTCCAAGCCAGCAACTGGGTACAATTGGAAGCTTTGCAATGTCACTGCTGGTCCCGATTTTATCCCATGCCTTGACAACTGGAAAGCTATTAGGAGTCTCCGGAGTACTAAACACTATGAACATCGAGAAAGGCACTGTCCTGAAGAACCTCCTACCTGCCTTGTTTCTCTTCCTAAAGGATATAAACGCTCAATCGAGTGGCCTGAAAGCAGAGAAAAGATTTGGTATTACAATGTTCCACACACCAAGCTTGCTGAAGTTAAGGGCCACCAGAATTGGGTGAAAGTTACTGGCGAGTACCTTACTTTTCCTGGGGGTGGAACCCAATTCAAGCATGGGGCACTTCATTACATTGACTTTATACAAGAGACTGTACCTGACATTGCTTGGGGCAAACGCACACGTGTTATACTAGATGTTGGATGCGGTGTTGCAAGTTTTGGAGGTTTTCTCTTTGATAGAGATGTACTTGCTATGTCACTTGCACCAAAGGATGAACATGAAGCTCAGGTACAATTTGCACTTGAAAGGGGGATTCCTGCTATATCTGCTGTGATGGGCACAAAGAGGCTTCCCTTCCCCGGGAAAGTATTTGATGTAGTCCATTGTGCACGATGTAGAGTTCCATGGCATATAGAAGGTGGTAAACTTCTTTTGGAGCTGAATAGAGTATTGCGACCTGGTGGTTTTTTTGTGTGGTCAGCTACTCCTATTTATCAGAAGCTTCCTGAAGATGTTGAAATATGGAATGCCATGAAGAAACTAACAAAAGCAATCTGTTGGGAACTCGTGTCAATCAGCAAGGATCAAATAAATGGAGTAGGTGTAGCCGTATACAAGAAGCCAATGTCCAACGAGTGTTATGAGCAACGTTCAAAGAATGAGCCTCCGCTGTGTCCAGACTCTGATGATCCTAATGCAGCATGGAACATTCAATTGCAAGCTTGCATACACAAAGCGCCTGTTAGTTCAAAGGAACGAGGGTCAAAATTGCCAGATAAGTGGCCAGCCAGACTGACCAAAGTGCCTTATTGGTTGCTGAGTTCCCAAGTTGGAGTTTATGGAAAGCCTGCTCCTGAAGATTTCACTGCTGATTATGAACACTGGAAACGCGTAGTGTCCAAGTCTTATCTAACTGGGATGGGAATCCAATGGTCAAATGTACGCAATGTCATGGATATGAGATCTATCTACGGAGGATTTGCTGCAGCTTTGAGAGATTTGAATGTTTGGGTCATGAATGTGGTTACAATAGACTCCCCAGACACTCTACCCATTATCTACGAACGAGGTCTTTTTGGTATATATCATGATTGGTGTGAATCATTTAGCACGTATCCTAGGACCTATGATCTCCTCCATGCCGATCATCTGTTTTCAAAGCTTAAGAAAAGGTGCAATTTGGCTGCTGTAGTGGCTGAGGTTGATCGGATTCTCCGGCCTGAAGGAAAACTTATTGTTCGTGACACTGTTGAGATCATTGACGAGCTTGAGAGCATGGTAAGGTCTATGCAGTGGAAGGTTCGCATGACTTACTCCAAGGATAAGGAGGGCTTGCTATGTGTGCAGAAGTCCACGTGGCGTCCTAAGGAGCAGGAGAAACTCGAGTATGCTATTATTTAA 2433 0.434 MALGKYTRVDGRRSSSWCSTVTVVVFVALCLVGVWMMTSSSVVNVRSGDQAQESNTEVKEKTEVKESVSEISNSNSRQFEDNPGDLPEDATKGDSNVTSEDDSNPSDKQEEKLEENPVEKSSEDAKTEDGDKKIEEEGSNTENESNSDSAESNKDSDETSTKESDSEENEKKSESDDNKKSDSDESEKQSDNSDETTDSKIEEKVEENDNKESDENSSEKNTNDDTKQQSSNEVFPSGAQSELQDESTTQTGSWSTQAAESKNEKESQESSKPATGYNWKLCNVTAGPDFIPCLDNWKAIRSLRSTKHYEHRERHCPEEPPTCLVSLPKGYKRSIEWPESREKIWYYNVPHTKLAEVKGHQNWVKVTGEYLTFPGGGTQFKHGALHYIDFIQETVPDIAWGKRTRVILDVGCGVASFGGFLFDRDVLAMSLAPKDEHEAQVQFALERGIPAISAVMGTKRLPFPGKVFDVVHCARCRVPWHIEGGKLLLELNRVLRPGGFFVWSATPIYQKLPEDVEIWNAMKKLTKAICWELVSISKDQINGVGVAVYKKPMSNECYEQRSKNEPPLCPDSDDPNAAWNIQLQACIHKAPVSSKERGSKLPDKWPARLTKVPYWLLSSQVGVYGKPAPEDFTADYEHWKRVVSKSYLTGMGIQWSNVRNVMDMRSIYGGFAAALRDLNVWVMNVVTIDSPDTLPIIYERGLFGIYHDWCESFSTYPRTYDLLHADHLFSKLKKRCNLAAVVAEVDRILRPEGKLIVRDTVEIIDELESMVRSMQWKVRMTYSKDKEGLLCVQKSTWRPKEQEKLEYAII 810
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca03g00184 810 PANTHER PMT26-LIKE PROTEIN, PUTATIVE-RELATED 5 65 - -
Cca03g00184 810 PANTHER PMT26-LIKE PROTEIN, PUTATIVE-RELATED 188 805 - -
Cca03g00184 810 PANTHER SAM-DEPENDENT METHYLTRANSFERASE 5 65 IPR004159 GO:0008168
Cca03g00184 810 PANTHER SAM-DEPENDENT METHYLTRANSFERASE 188 805 IPR004159 GO:0008168
Cca03g00184 810 CDD AdoMet_MTases 407 502 - -
Cca03g00184 810 MobiDBLite consensus disorder prediction 101 140 - -
Cca03g00184 810 MobiDBLite consensus disorder prediction 223 261 - -
Cca03g00184 810 MobiDBLite consensus disorder prediction 47 275 - -
Cca03g00184 810 Gene3D Vaccinia Virus protein VP39 381 585 IPR029063 -
Cca03g00184 810 Pfam Putative S-adenosyl-L-methionine-dependent methyltransferase 289 794 IPR004159 GO:0008168
Cca03g00184 810 MobiDBLite consensus disorder prediction 53 67 - -
Cca03g00184 810 MobiDBLite consensus disorder prediction 148 222 - -
Cca03g00184 810 SUPERFAMILY S-adenosyl-L-methionine-dependent methyltransferases 622 790 IPR029063 -
Cca03g00184 810 SUPERFAMILY S-adenosyl-L-methionine-dependent methyltransferases 312 564 IPR029063 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca03g00184 Cca-Chr3 2750289 2756452 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca03g00184 - - gmx:100777586 1355.12