Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca03g00178 ATGAGGAAATCCACGGCCATCCTCTCTCATTTCAAATCAAAAATGAATCTCTCCGCTTCGCTTCGCTCCAATCAATTTCACCCTAATTTAAGGAATCTCACGACGCACAATCGCAACTCGGTCTTGTTTTCCCTTCTCTCTTCGCGTCGCTTTGCTTCCATTTCTCCTTCTGCATTCAAGGATCCTCTTCAGAATCAGGTCATGGATTTTCCTGGAGGACCAGTAGAATTCATCCCTGAAATGAGGTTTATATCTGAATCCTCTAAAGAGAGAATACCCTGCTATCGTGTCCTTGATGATAATGGGCAGCCAATTTTGGGCCATAACTTTGTGCAGGTCAGTGAGGAAGTTGCTCTTAAAATGTATACTGACATGGTTACTCTCCGATCTATGGACACTATCTTCTATGAAGCACAAAGGCAAGGCAGGATATCGTTTTATGTGACAGCAATTGGAGAGGAGGCTATCAATATTGCTTCAGCTGCAGCTCTTGCCATGGACGATGTCGTTTTCCCTCAGTATAGGGAAGCGGGAGTCTTGTTATGGCGCGGTTTCACTCTGCAGGAATTTACAAACCAGTTATTTTCCAATAAAAATGATAATGGGAAAGGAAGGCAGATGCCAGCTCATTATGGATCCAAGAAGCACAATTACTTTACAGTCGCATCAACTATTGCTACACAAATTTCCCATGCCGTTGGAGCTGCTTATTCCTTAAAGATGGATAAAAAGGATGCATGTGCTGTCACTTACTTTGGTGATGGTGGATCAAGTGAGGGAGATTTCCACGCTGCTTTAAATTTTGCAGCAGTTACGGAGGCCCCAGTTATTTTTATATGCCGGAACAATGGATGGGCTATCAGTACTCCCATTTCTGATCAGTTTCGAAGTGATGGTGTTGTTGTGAAAGGACAAGCCTATGGAGTCCGTAGCATCCGTGTAGATGGAAATGATGCCTTGGCCATTTATAGTGCTGTTCAAGCTGCTCGTCAAATGGCAGTTACTGAAGAGAGACCAATTCTAATAGAAGCTCTTACATATAGAGTTGGACACCACACCACATCAGATGACTCTACCAAGTATCGTCCAGCAAATGAGATTGAATGGTGGAGAGTGGCACGTGATCCTGTGGCTAGATTTAGAAAGTGGATAGAAAATAATGGCTGGTGGAATGATATGGCTGAGTCAGAGCTTATAAACAATTTGAGACAACGGCTTCTGCATACAATTCAAGTTGCAGAGAGTGTAGAAAAACCACCACTAGCTGATTCATTTACTGATGTTTATGATGTCCCTTCATCAAATCTCCGTGAACAAGAGCAATGGCTGAAGGAGATTGTAAGAAAACAACCACAAGAGTACCCAGCAAATATTTTAGTTTGA 1383 0.4273 MRKSTAILSHFKSKMNLSASLRSNQFHPNLRNLTTHNRNSVLFSLLSSRRFASISPSAFKDPLQNQVMDFPGGPVEFIPEMRFISESSKERIPCYRVLDDNGQPILGHNFVQVSEEVALKMYTDMVTLRSMDTIFYEAQRQGRISFYVTAIGEEAINIASAAALAMDDVVFPQYREAGVLLWRGFTLQEFTNQLFSNKNDNGKGRQMPAHYGSKKHNYFTVASTIATQISHAVGAAYSLKMDKKDACAVTYFGDGGSSEGDFHAALNFAAVTEAPVIFICRNNGWAISTPISDQFRSDGVVVKGQAYGVRSIRVDGNDALAIYSAVQAARQMAVTEERPILIEALTYRVGHHTTSDDSTKYRPANEIEWWRVARDPVARFRKWIENNGWWNDMAESELINNLRQRLLHTIQVAESVEKPPLADSFTDVYDVPSSNLREQEQWLKEIVRKQPQEYPANILV 460
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca03g00178 460 PANTHER 2-OXOISOVALERATE DEHYDROGENASE SUBUNIT ALPHA 2, MITOCHONDRIAL 47 458 - -
Cca03g00178 460 SUPERFAMILY Thiamin diphosphate-binding fold (THDP-binding) 93 455 IPR029061 -
Cca03g00178 460 CDD TPP_E1_PDC_ADC_BCADC 121 419 - -
Cca03g00178 460 Gene3D - 63 459 - -
Cca03g00178 460 PANTHER 2-OXOISOVALERATE DEHYDROGENASE SUBUNIT ALPHA, MITOCHONDRIAL 47 458 - -
Cca03g00178 460 Pfam Dehydrogenase E1 component 124 419 IPR001017 GO:0016624
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca03g00178 Cca-Chr3 2688152 2697899 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca03g00178 65 298 Acyl Lipid Metabolism Gene Families AT5G09300 80.769 4.05e-141 406
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca03g00178 K00166 - gmx:100779198 759.599