Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca03g00174 ATGGAATCGGACAAGACACTCCTGGGGGCCTGCACCAGGCCCTCCTGGGCCCTCGCATTCATCCTCTTCACTCTCCTCATCTTTCTCTCCTTCCACCTTCCCGCCAGGCCCGTTTGGCTCCTCGCCGGCCCGCTTCCCGGCCCCGGCCCCGATCCACCCTCCTGCTCCGACTTCTTCCGCGCCGTTCCGCCGCGGAAGGTCGTCATGTCCATCGAGGACTTCGGCGGCGTCGGCGACGGCATCACCTCCAACACCGAATCCTTTCGACGGGCCATTCGCTACATGCACCGCTTCCGGAACCTTGGTGGGGCCCAGCTCAATGTCCCCAATGGAACGTGGCTCACCGGAAGTTTTAACCTCACCAGTAATTTCACGCTTTTTCTTCACCGCGGTGCCGTTATTCTCGCCTCTCAGGACCCGAAAGAGTGGCCAATAATTGAGCCATTGCCATCTTATGGAAGAGGGAGAGAGAGGTTTGGAGGAAGGCATATTAGTCTTATACATGGAAATGGCATCAGCAATGTTGTCATCACTGGAGAAAATGGGACAGTTGATGGTCAAGGAAAGATGTGGTGGGAACTGTGGTGGAACAGAACATTGGAGCACACAAGAGGGCACCTCCTTGAAATAATGAACTCGGATAATGTTCTCATATCAAACCTCACCTTTCAAAATTCCCCTTTTTGGACCATCCATCCTGTTTATTGCAGAAATGTTGTGGTCAAAGGGATGACAATCTTGGCTCCTCTTAATGCCCCAAATACTGATGGCATAGACCCTGACTCAAGTAGCAACGTATGTATTGAAGATAACTACATAGAAAGTGGGGATGATCTTGTAGCCATCAAGAGTGGTTGGGATCAATATGGAATCACTGTGGCCCATCCTAGCACAAATATCATAGTGAGGAGAATATCCGGCACCACCCCAACTTGTTCTGGAGTAGGCATAGGTAGTGAAATGTCTGGCGGAATTTCAAACATCACAATTGAGAATTTGCATGTGTGGGATTCTGCAGCTGGTGTTCGCATAAAATCTGACAAAGGCAGAGGAGGCTACATAGCCAATGTAAGCATAAGTGACATAAGAATGGAGAGAGTGAAGATACCCATTAGGTTCAGTAGAGGCTCAAATGATCACCCTGATGATGGGTGGGATCCAAAAGCTGTTCCTAGATTCAAAAATATTATAATCAGCAATGTGGTCAGTGTAAATTCAACAAAAGCCCCGGTTTTGGAAGGTGTAGAGGGTTCATCCTTTGAAGGCTTGTGCTTCAAAAATATTACCCTTCATGGTGTAGCCTTATCTGCAAAATGGCGTTGTGAATTTGTCTCTGGTTTTGCCACAAGGGTTTTCCCTGTTCCATGTCTTGAGTTGCGGAACAATAGCTATTCATCATGGTGTTCACCTTCTTGA 1416 0.4859 MESDKTLLGACTRPSWALAFILFTLLIFLSFHLPARPVWLLAGPLPGPGPDPPSCSDFFRAVPPRKVVMSIEDFGGVGDGITSNTESFRRAIRYMHRFRNLGGAQLNVPNGTWLTGSFNLTSNFTLFLHRGAVILASQDPKEWPIIEPLPSYGRGRERFGGRHISLIHGNGISNVVITGENGTVDGQGKMWWELWWNRTLEHTRGHLLEIMNSDNVLISNLTFQNSPFWTIHPVYCRNVVVKGMTILAPLNAPNTDGIDPDSSSNVCIEDNYIESGDDLVAIKSGWDQYGITVAHPSTNIIVRRISGTTPTCSGVGIGSEMSGGISNITIENLHVWDSAAGVRIKSDKGRGGYIANVSISDIRMERVKIPIRFSRGSNDHPDDGWDPKAVPRFKNIIISNVVSVNSTKAPVLEGVEGSSFEGLCFKNITLHGVALSAKWRCEFVSGFATRVFPVPCLELRNNSYSSWCSPS 471
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca03g00174 471 Gene3D - 58 445 IPR012334 -
Cca03g00174 471 Pfam Glycosyl hydrolases family 28 165 445 IPR000743 GO:0004650|GO:0005975
Cca03g00174 471 PANTHER PECTIN LYASE-RELATED 9 469 - -
Cca03g00174 471 SUPERFAMILY Pectin lyase-like 62 460 IPR011050 -
Cca03g00174 471 SMART pbh1 325 346 IPR006626 -
Cca03g00174 471 SMART pbh1 263 295 IPR006626 -
Cca03g00174 471 SMART pbh1 297 319 IPR006626 -
Cca03g00174 471 SMART pbh1 236 262 IPR006626 -
Cca03g00174 471 PANTHER PECTIN LYASE-LIKE SUPERFAMILY PROTEIN 9 469 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca03g00174 Cca-Chr3 2641627 2645401 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca03g00174 1 459 Glycoside Hydrolase AT4G33440 68.455 0.0 640
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca03g00174 - - gmx:100814190 857.055