Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca03g00173 ATGAAGACAAAATCCCATTTTCCCTTCCTCCTCATGCTTCTCATACCCTTCACAATTCAACATATTTGTTCAGCAGAATGTGACAATCTGAAGGACTATTGCCCTACAACACCGCCCCAAAAGAATGCCATATTCATCAATGGCCTACCTTGTGATAACCCATCTAACACAAGTGCACATGATTTCAAGAGCATGGAACTAAGCAAGCCAGGTTCAAGGGACAATTTTGGTTCACTAGTTAAGATTGTTACTGCTTCAAAGTTCCCTGGCCTTAACACCCTTGGCCTCTCTATTGGTAGAAGTGACATAGAAGTTGATGGGCTTGTGAACCTCCACAATCACCCTAGAGCCACTGAGATGGTCTTTGTCAGTGAAGGTGTGTTGGTGGCTGCGTTTCTCAACACGCAAAACAAGCTCTTCCAAAAGACTCTTAAGGCTGGTGATGTGTTTGTGATCCCCAAGGGCTTGTTCCATTTCTTCCTCAACCGTGGTGCACAAGTTGCAACTGTGTTTTCTGTGTTCAATAGCCAAAATCCTGGGTTGGGGTCCCTCTCTTCAATTCCTTCTGACACGTTGGAATCGGTTGAGAAGATCAAGAGGAAGATTGTCTCACTTTCTGACTCACAACTTCGTGGTGTTGATGATTTGACTGAGGCAGTGTTGGATATCATTTATAGTTAA 681 0.4391 MKTKSHFPFLLMLLIPFTIQHICSAECDNLKDYCPTTPPQKNAIFINGLPCDNPSNTSAHDFKSMELSKPGSRDNFGSLVKIVTASKFPGLNTLGLSIGRSDIEVDGLVNLHNHPRATEMVFVSEGVLVAAFLNTQNKLFQKTLKAGDVFVIPKGLFHFFLNRGAQVATVFSVFNSQNPGLGSLSSIPSDTLESVEKIKRKIVSLSDSQLRGVDDLTEAVLDIIYS 226
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca03g00173 226 Pfam Cupin 69 184 IPR006045 -
Cca03g00173 226 CDD cupin_OxOx 28 202 - -
Cca03g00173 226 SMART Cupin_1_3 65 204 IPR006045 -
Cca03g00173 226 ProSitePatterns Germin family signature. 107 120 IPR019780 GO:0030145
Cca03g00173 226 SUPERFAMILY RmlC-like cupins 46 195 IPR011051 -
Cca03g00173 226 PRINTS Germin signature 112 132 IPR001929 GO:0030145
Cca03g00173 226 PRINTS Germin signature 142 162 IPR001929 GO:0030145
Cca03g00173 226 PRINTS Germin signature 175 190 IPR001929 GO:0030145
Cca03g00173 226 Gene3D Jelly Rolls 25 213 IPR014710 -
Cca03g00173 226 PANTHER GERMIN-LIKE PROTEIN SUBFAMILY 3 MEMBER 4 12 210 - -
Cca03g00173 226 PANTHER GERMIN-LIKE PROTEIN SUBFAMILY 3 MEMBER 3 12 210 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca03g00173 Cca-Chr3 2638755 2639658 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca03g00173 21 201 Miscellaneous Gene Families AT3G05930 38.693 4.25e-34 120
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca03g00173 - - gmx:100809017 364.77