Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca03g00161 ATGAGCAGAGGCTCATACATCTCTAGCAGCCCCTTTACTGGTAGATTTCATGCTAGAAAGCTATCTCCCAGTGTTATCACTTTCTACATCATGTTCATATTTGCTTTCTCCATCTTCGTGTTCTTTTTCTACATGAGGAACATTAGTGTTGACGAAGATCCACCATACCCTTTGCTTTCTCAGCAATCTAAACCTCACCAGGTGCCAGAGTTACATGTGCACTATAAGCAACTTTGGGAGTCTCCGTTCAATCATAGCTTACACCAATGTGTCAAGCCAACTACTAAATACAAAGCTGCTCACGGATTTGATCGCTATTTGACTGTGAGAAGTAATGGTGGACTAAATCAAATGCGAACTGGTATATCAGACATGGTGGCCGTGGCACATATAATGAATGCAACTTTAGTCATACCGCAATTGGATAAACGTTCATTCTGGAAAGACTCAAGTGTATTTTCAGATATATTTGATGAACTTCACTTCATCGAATCCATGAAAGGCGATGTCAGGATTGTTAAGGAGCTTCCCAAAAACTTGGAAGGAGTCCCCCGAGCCAGGAAACACTTTACTTCCTGGTCTGGGGTTGGTTACTATGAAGAGATGTCCAGGTTATGGAATGACTATCAGGTGATACATGTTGCAAAATCAGATTCTCGACTTGCAAACAACGATCTTCCTCTGGACATACAGAGATTGAGATGCCGTGCTATGTATCATGCACTTCGATTTTCTCCTCCTATAGAGAATTTAGGAAAGAGGTTGGTGGATCGTCTGAGATCACGCGGAGGAAGATATATTGCTCTCCATCTGAGATATGAGAAAGATATGCTGTCTTTTACTGGTTGTGCATATGGTCTGACAGATGCTGAATCTGAAGAGCTTAGAATTTTGAGGGAGAACACAAATTATTGGAAAGTTAAAAAGATAAATTCAACAGAACAGAGAATTGGAGGATTTTGTCCGCTGACTCCAAAGGAGGTGGGCATTTTTCTTCATGCTCTTGGCTATCCCCCTTCAACACCAATATACATTGCAGCAGGAGAGATCTATGGTGGTAATGCTCATCTTTCAGAGCTCTCATCCCGCTTCCCTAATCTAATCTTTAAGGAATCCCTTGCAACTCCTGAAGAGCTGAAAGCTTTCGCCAATCATGCATCTCAAACTGCTGCACTTGATTACATAATCTGTGTAGAGAGTGATGTATTTGTTCCGTCATATTCAGGAAATATGGCAAGAGCAGTTGAGGGACACCGCAGATTCTTAGGTCACCGCAAGACAATCAACCCAGACAGGAAAGGACTTGTTGGAATTTTTGATATGTTGGGAACTGGAGAGCTAGAAGAAGGAAAGGAACTGTCACATATGGTGCAGCGAATGCACAAGAACAGGCAAGGAGCTCCAAGGAAAAGGCACGGTTCCCTACCAGGAATTAAAGGCCGAGCACGATTTAGGACTGAAGAGTCCTTCTATGAAAATCCATATCCTGAGTGTATATGTGGTTCTAGAAGCAAACTGGAAATAACATGA 1530 0.4222 MSRGSYISSSPFTGRFHARKLSPSVITFYIMFIFAFSIFVFFFYMRNISVDEDPPYPLLSQQSKPHQVPELHVHYKQLWESPFNHSLHQCVKPTTKYKAAHGFDRYLTVRSNGGLNQMRTGISDMVAVAHIMNATLVIPQLDKRSFWKDSSVFSDIFDELHFIESMKGDVRIVKELPKNLEGVPRARKHFTSWSGVGYYEEMSRLWNDYQVIHVAKSDSRLANNDLPLDIQRLRCRAMYHALRFSPPIENLGKRLVDRLRSRGGRYIALHLRYEKDMLSFTGCAYGLTDAESEELRILRENTNYWKVKKINSTEQRIGGFCPLTPKEVGIFLHALGYPPSTPIYIAAGEIYGGNAHLSELSSRFPNLIFKESLATPEELKAFANHASQTAALDYIICVESDVFVPSYSGNMARAVEGHRRFLGHRKTINPDRKGLVGIFDMLGTGELEEGKELSHMVQRMHKNRQGAPRKRHGSLPGIKGRARFRTEESFYENPYPECICGSRSKLEIT 509
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca03g00161 509 CDD O-FucT_plant 106 427 IPR024709 -
Cca03g00161 509 Pfam GDP-fucose protein O-fucosyltransferase 106 421 IPR019378 -
Cca03g00161 509 PIRSF UCP009360 5 504 IPR024709 -
Cca03g00161 509 Gene3D - 239 430 - -
Cca03g00161 509 PANTHER OS02G0726500 PROTEIN-RELATED 9 504 - -
Cca03g00161 509 PANTHER O-FUCOSYLTRANSFERASE 38 9 504 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca03g00161 Cca-Chr3 2414730 2423439 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca03g00161 75 500 Miscellaneous Gene Families AT1G22460 59.016 0.0 543
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca03g00161 - - gmx:100810961 963.37