Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca03g00160 ATGAATTCTCAAATCGCAAACACCATCCCAAAACCCTTATTCCCTCCCAAAACCTCTTTCCCCCAATTTCCCCACTCTTCACCTCGCTTTCTCACCACTACGTACACATTCCCCCCTCGCAACTTCAAAAACCGATGCAAACTCAGAATCGTAGCTTCCAATTCTCTTTCGGACTCAACCACTCCCAGCCCAGACCAACAACAAGACGCCGAATCCGTTCAACTATTCGAGAAACTGAAGGAGGTTGAAAGGAAACGGATGAGTGAGTTGGAAGAGTTTGACAAGAAGGCGAACGTGCAGTTAGAGAGGCAGCTTGTGATGGCTTCTTCATGGAGCAGAGCTTTGTTGACTTTGCGTGGAAAGCTGAAGGGAACTGAGTGGGATCCTGAAAATTCACACAGGATAGACTTCAGTGATTTTGTGAGGCTTCTTGACTCCAATAATGTCCAGTTCATGGAGTACTCTAATTACGGTCAAACAATATCAGTTATTCTACCATATTACAAAAATGGTAAACCATCAGGAACTGCAGGCAATCCTAAGGATATTATTTTTCGGCGTCATCCAGTTAATCGAATGCCAATTGACTGTTGGAATGATGTTTGGAGAAAGCTACATCAACAAATTGTAAATGTTGATGTCATTAATGTGGATGCCGTACCTGCTGAAATATACTCAACTGTTGCAACTGCAGTCATATGGTCTATGCGTCTTGCTCTGGCTGTTGGTTTTTATGTGTGGATTGATAATTTAATGAGACCAATATATGCGAAGTTGATACCTTGTGATTTGGGAACTCCTACCCAACAAACTAGGCAGCCGCTCAAAAGTCGTTCACTTGGATCTCTAGGCCAGAGTCGGGCTAAATTTATATCAGCAGAAGAAAGAACTGGTGTTACATTTGATGATTTTGCTGGCCAGGAATATATAAAGAAAGAACTACAAGAGATTGTCCGAATTTTAAAGAATGATGAGGAGTTTCAAGACAAAGGAATTTATTGTCCAAAAGGGGTACTTCTTCATGGGCCTCCTGGAACTGGTAAAACTCTACTGGCTAAAGCCATTGCAGGTGAAGCAGGGTTGCCTTTTTTTGCAGCTAATGGCACGGATTTTGTAGAGATGTTTGTAGGGGTTGCTGCAGCCCGTGTTAAAGACCTTTTTGGAAATGCAAGATCATTTTCGCCTTCTATAATCTTTATAGATGAGATAGATGCTATTGGTAGCAAGCGTGGAGGACCTGATATTGGCGGAGGAGGTGCTGAAAGGGAACAGGGCTTACTTCAGATACTAACTGAGATGGATGGATTCAAAGTTTCTACAGCACAGGTGCTCGTGATAGGTGCCACAAATAGATTGGATATTCTTGATCCTGCTTTATTGAGGAAGGGTCGTTTTGACAAAATCATTAGAGTTGGTTTGCCATCAGAAGATGGAAGATTTGCCATTTTGAAGGTGCATGCTAGGAATAAATTTTTTCGCTCTGAGGAGGAAAAGGAGACTCTACTTAAGGAAATTGCAGAACAGACAGAAGATTTTACTGGGGCTGAGCTACAAAATATACTGAATGAAGCTGGAATTTTGACAGCCAGGAAGGATTTGGACTACATTGGGCGAGATGAGCTGCTTGAGGCATTAAAAAGGCAAAAGGGAACATTTGAAACAGGTCAAGAGGATAGTACTGAAATTCCTGAAGAATTGAAACTGAGATTGGCATACAGAGAAGCAGCTGTTGCTGTTCTTGCATGTTATTTTCCCGAGCCTCACCGTCCTTTTGTTGAGACTGATATAAATTCTATCCGCAGCCAGCCAAATATGCGTTATACTGAAGTTTCTGGCCAGGTTTTTGCAAGGAAATCAGATTATGTAAACTCTATAGTGCGTGCTTGTGCTCCAAGAGTGATTGAGGAGGAGATGTTTGGGATTGACAACTTGTGTTGGATCTCTGCAAAGGCAACATTAGAAGCTTCAAGGCGTGCAGAGCTTTTAATTCTGCAGACAGGAATGACTGCTTTTGGGAAAGCATATTACAAAAGCTACAGTGATCTTGTGCCCAATCTTGCAGTGAAGCTTGAAGCGCTTCGAGATGAGTATATGCGTTATGCTACTGAGAAGTGCTCATCTGTGCTAAAAGAATATCATTTAGCAGTTGAGACGATCACAGATATTTTGCTTGAAAAGGGAAAAATCCAAGCTGAGGAGATATGGGACATTTATAAGAGTGCTCCTCATGTAGCTCAGCCTCCTGTCAGTCCAGTTGATGAATATGGAGCACTGGTTTATGCTGGACGATGGGGAATCCATGGGATCAGTCTCCCTGGAAGGGTTACATTTGCACCAGGCAATGTTGGGTTTTCAACCTTTGGTGCACCTCGTCCTACAGAGACGCAAATTGTTAGTGATGAAACTTGGAAACTAGTAGATGATATCTGGGATAAAAAAATTGAAAACATTAAGGAAGAAACTTCAAGGGTGATTGAAGAAGAGAAAGAAAAGCCACAACTTTTGATGGCAAGCCATTTTCTTTGA 2526 0.4208 MNSQIANTIPKPLFPPKTSFPQFPHSSPRFLTTTYTFPPRNFKNRCKLRIVASNSLSDSTTPSPDQQQDAESVQLFEKLKEVERKRMSELEEFDKKANVQLERQLVMASSWSRALLTLRGKLKGTEWDPENSHRIDFSDFVRLLDSNNVQFMEYSNYGQTISVILPYYKNGKPSGTAGNPKDIIFRRHPVNRMPIDCWNDVWRKLHQQIVNVDVINVDAVPAEIYSTVATAVIWSMRLALAVGFYVWIDNLMRPIYAKLIPCDLGTPTQQTRQPLKSRSLGSLGQSRAKFISAEERTGVTFDDFAGQEYIKKELQEIVRILKNDEEFQDKGIYCPKGVLLHGPPGTGKTLLAKAIAGEAGLPFFAANGTDFVEMFVGVAAARVKDLFGNARSFSPSIIFIDEIDAIGSKRGGPDIGGGGAEREQGLLQILTEMDGFKVSTAQVLVIGATNRLDILDPALLRKGRFDKIIRVGLPSEDGRFAILKVHARNKFFRSEEEKETLLKEIAEQTEDFTGAELQNILNEAGILTARKDLDYIGRDELLEALKRQKGTFETGQEDSTEIPEELKLRLAYREAAVAVLACYFPEPHRPFVETDINSIRSQPNMRYTEVSGQVFARKSDYVNSIVRACAPRVIEEEMFGIDNLCWISAKATLEASRRAELLILQTGMTAFGKAYYKSYSDLVPNLAVKLEALRDEYMRYATEKCSSVLKEYHLAVETITDILLEKGKIQAEEIWDIYKSAPHVAQPPVSPVDEYGALVYAGRWGIHGISLPGRVTFAPGNVGFSTFGAPRPTETQIVSDETWKLVDDIWDKKIENIKEETSRVIEEEKEKPQLLMASHFL 841
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca03g00160 841 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 294 547 IPR027417 -
Cca03g00160 841 MobiDBLite consensus disorder prediction 1 20 - -
Cca03g00160 841 Gene3D Peptidase M41 556 743 IPR037219 GO:0004176|GO:0004222|GO:0005524|GO:0006508
Cca03g00160 841 Pfam ATPase family associated with various cellular activities (AAA) 338 472 IPR003959 GO:0005524|GO:0016887
Cca03g00160 841 PANTHER INACTIVE ATP-DEPENDENT ZINC METALLOPROTEASE FTSHI 4, CHLOROPLASTIC-RELATED 47 810 - -
Cca03g00160 841 Gene3D - 282 472 IPR027417 -
Cca03g00160 841 Pfam AAA+ lid domain 502 542 IPR041569 -
Cca03g00160 841 CDD AAA 305 473 - -
Cca03g00160 841 Gene3D - 474 554 - -
Cca03g00160 841 PANTHER METALLOPROTEASE M41 FTSH 47 810 - -
Cca03g00160 841 SMART AAA_5 334 475 IPR003593 -
Cca03g00160 841 SUPERFAMILY FtsH protease domain-like 563 744 IPR037219 GO:0004176|GO:0004222|GO:0005524|GO:0006508
Cca03g00160 841 ProSitePatterns AAA-protein family signature. 443 461 IPR003960 GO:0005524|GO:0016887
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca03g00160 Cca-Chr3 2402658 2412300 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca03g00160 198 549 Miscellaneous Gene Families AT3G02450 40.000 7.13e-67 233
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca03g00160 - - gmx:100782783 1548.49