Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca03g00158 ATGGCTTCTAAGATCTTCTTCCTATTTCTCCTCTTTCTAGCACACCCTCATCCACGTGCATTAGTGAATGGAGATGCTAGTTTGATCAAGAGAACTTGCAAGAACACCAAGTTCTACAATCTATGCTTCTCTTCCCTCAAATCTGATCCAACCAGCCCCAACGCAGACCCTAAGGGCCTAGCTATGATCATGATTGGGATTGGAATGACAAATGCCACCTCCACTTCTTCCTACTTGTCTTCTAAGGTTCTTAGCCCCACCAACAACACAACCTTGAAAAGGGTCCTCAAGGAGTGTGCAGATAAGTACAGTTATGCTGGGGATGCACTCCAAGCTTCGGTGCAGGATTTGGCTAATGAGGCTTATGACTATGCTTACATGCACATTCTTGCAGCCAAAGATTACCCAAATGCTTGTCACAACGCTTTCAAACGCTATCCTGGTTTGGTTTATCCTCTTGATCTTGCTCGTAGAGAAGATGGTTTGAAGCATATCTGTGATGTGGCAATGGGGATTATAGATAATCTCGATTGGACTAGACCACAAAGAAGATGA 555 0.4414 MASKIFFLFLLFLAHPHPRALVNGDASLIKRTCKNTKFYNLCFSSLKSDPTSPNADPKGLAMIMIGIGMTNATSTSSYLSSKVLSPTNNTTLKRVLKECADKYSYAGDALQASVQDLANEAYDYAYMHILAAKDYPNACHNAFKRYPGLVYPLDLARREDGLKHICDVAMGIIDNLDWTRPQRR 184
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca03g00158 184 CDD PMEI_like 33 175 - -
Cca03g00158 184 Pfam Plant invertase/pectin methylesterase inhibitor 27 171 IPR006501 GO:0004857
Cca03g00158 184 Gene3D Invertase/pectin methylesterase inhibitor family protein 24 176 IPR035513 -
Cca03g00158 184 PANTHER CELL WALL / VACUOLAR INHIBITOR OF FRUCTOSIDASE 2 9 176 - -
Cca03g00158 184 PANTHER PECTINESTERASE INHIBITOR-LIKE 9 176 - -
Cca03g00158 184 SMART PMEI_2 24 172 IPR006501 GO:0004857
Cca03g00158 184 SUPERFAMILY Plant invertase/pectin methylesterase inhibitor 26 176 IPR035513 -
Cca03g00158 184 TIGRFAM PME_inhib: pectinesterase inhibitor domain 4 176 IPR006501 GO:0004857
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca03g00158 Cca-Chr3 2385675 2392100 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca03g00158 - - gmx:100306461 317.005