Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca03g00153 ATGACCAAGTTCAGGAAACTCGGTCGACCCACCGGTCACCGAATGTCCATGCTCAGAACCATGGTCTCGCAGTTGGTGAAGCACGAGCGCATCGAAACTACTGTCGCCAAGGCGAAAGAGATCAGAAGACTCGCGGATAATATGGTGCAGCTTGGAAAGGAGGGATCCCAATGTGCTGCGAGACGTGCTGCTAGTTTTGTGCGAGGAGATGACGTCCTTCACAAGCTCTTTACAGAGCTGGCTTATCGCTATAAGGATAGAGCTGGGGGATATACCAGATTGCTTCGAACCCGAATCCGAGTCGGTGATGCTGCACCAATGGCCTATATCGAGTTTATTGACAGAGAGAATGAGCTTAGGCAGTCAAAACCACCAACTCCTCAACCACAACAGAGAGCACCCCTTGATCCCTGGACACGTTCTCGTCTCAGCAGGCAATTTGCACCTCCTAAAGAGGAAAAATCTGGATCTGATTTGTGA 480 0.5042 MTKFRKLGRPTGHRMSMLRTMVSQLVKHERIETTVAKAKEIRRLADNMVQLGKEGSQCAARRAASFVRGDDVLHKLFTELAYRYKDRAGGYTRLLRTRIRVGDAAPMAYIEFIDRENELRQSKPPTPQPQQRAPLDPWTRSRLSRQFAPPKEEKSGSDL 159
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca03g00153 159 PANTHER RIBOSOMAL PROTEIN L17 1 156 IPR000456 GO:0003735|GO:0005840|GO:0006412
Cca03g00153 159 Gene3D Ribosomal protein L17 1 113 IPR036373 GO:0003735|GO:0005840|GO:0006412
Cca03g00153 159 MobiDBLite consensus disorder prediction 117 159 - -
Cca03g00153 159 Hamap 50S ribosomal protein L17 [rplQ]. 2 113 IPR000456 GO:0003735|GO:0005840|GO:0006412
Cca03g00153 159 PANTHER BNAA09G06940D PROTEIN 1 156 - -
Cca03g00153 159 SUPERFAMILY Prokaryotic ribosomal protein L17 3 116 IPR036373 GO:0003735|GO:0005840|GO:0006412
Cca03g00153 159 Pfam Ribosomal protein L17 17 113 IPR000456 GO:0003735|GO:0005840|GO:0006412
Cca03g00153 159 TIGRFAM L17: ribosomal protein bL17 4 114 IPR000456 GO:0003735|GO:0005840|GO:0006412
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca03g00153 Cca-Chr3 2233211 2234615 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca03g00153 K02879 - gmx:100785280 305.064