Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca03g00144 ATGGCGACAAAAGCTTTATCCTTCGCTCTCTCTCTCAATGACCTCACCAACCCCTTCTCTTCCAACCCACCACACGCCGCCACCAAAGTTTCCATCTTTACCGTCAGATGCTCTTCCGGTAATGGAGAGAGGCCTTGGAAAAACTCAGATGCTAGACTTGTGCTGGAAGATGGTTCAATTTGGAAGGCAAAGTCGTTTGGTGCTTCGGGGACACAAGTTGGCGAAGTTGTTTTTAACACATCATTGACAGGGTATCAGGAAATTTTGACAGACCCTAGTTATGCTGGCCAGTTTGTGCTGATGACAAACCCACATATTGGGAACACTGGTGTAAATTTTGATGATGAGGAATCAATACAGTGTTTCCTTGCTGGTCTTGTAATTAGAAGTTTGAGCATCAGTACCTCTAACTGGAGATGTGCGAAGGATCTCGGTGATTACTTGGCCGAAAGGAATATCATGGGAATTTATGATGTTGATACTCGTGCAATCACACGCAGATTGCGGCAAGATGGCAGTCTTATTGGTGTCTTGAGCACTGACAATTCCAAATCGGATGAGGAACTGCTTAAGATGTCTAAGTCTTGGGACATTGTTGGTATTGATCTAATAAGTGGTGTATCATGCAAAACTCCACATGAATGGGTTGACAAAACTAAGCAAGAATGGGAGTTTAGTTCCAATAAAGTGCCAGGAGAGACTTTCCATGTAGTTGCATATGATTTTGGAATCAAGCATAATATACTCAGGCGCCTTGCATCTTATGGCTGCAAAATTACTGTTGTGCCATCTACGTGGCCAGCATCAGAGACTCTGAAGATGAAGCCAGATGGAGTCCTTTTCAGCAATGGCCCTGGTGATCCATCTGCTGTTCCTTATGCCGTTGAAACAGTAAAGAATATTATCGGAAAGGTGCCTGTTTTTGGAATTTGCATGGGCCATCAATTGCTGGGCCAGGCTTTAGGAGGTAAAACCTTCAAGATGAAATTTGGTCACCATGGAGGAAATCATCCTGTTCGTAACCTTCAAACTGGCCATGTTGAAATTAGTGCTCAGAACCACAACTATGCTGTTGACCCAGCCACACTGCCAGAGGGAGTGGAGGTTACTCATATCAATCTTAATGATGGAAGTTGTGCCGGTCTTGCTTTCCCTGCTCAAAGACTTGTGTCTCTTCAATACCATCCTGAAGCATCCCCTGGGCCTCATGATTCTGACTACGCTTTTAGGGGGTTTATAGAGCTAATGAAGCAAGGAAAAAACAGAACACCAAAGGAAAGTCTACACAAACTATCAGCGGTGCATGCTTTGGATGCATAG 1320 0.4424 MATKALSFALSLNDLTNPFSSNPPHAATKVSIFTVRCSSGNGERPWKNSDARLVLEDGSIWKAKSFGASGTQVGEVVFNTSLTGYQEILTDPSYAGQFVLMTNPHIGNTGVNFDDEESIQCFLAGLVIRSLSISTSNWRCAKDLGDYLAERNIMGIYDVDTRAITRRLRQDGSLIGVLSTDNSKSDEELLKMSKSWDIVGIDLISGVSCKTPHEWVDKTKQEWEFSSNKVPGETFHVVAYDFGIKHNILRRLASYGCKITVVPSTWPASETLKMKPDGVLFSNGPGDPSAVPYAVETVKNIIGKVPVFGICMGHQLLGQALGGKTFKMKFGHHGGNHPVRNLQTGHVEISAQNHNYAVDPATLPEGVEVTHINLNDGSCAGLAFPAQRLVSLQYHPEASPGPHDSDYAFRGFIELMKQGKNRTPKESLHKLSAVHALDA 439
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca03g00144 439 Pfam Glutamine amidotransferase class-I 240 414 IPR017926 -
Cca03g00144 439 PRINTS Carbamoyl-phosphate synthase protein GATase domain signature 237 251 - -
Cca03g00144 439 PRINTS Carbamoyl-phosphate synthase protein GATase domain signature 276 290 - -
Cca03g00144 439 PRINTS Carbamoyl-phosphate synthase protein GATase domain signature 306 322 - -
Cca03g00144 439 PRINTS Carbamoyl-phosphate synthase protein GATase domain signature 323 340 - -
Cca03g00144 439 PRINTS Carbamoyl-phosphate synthase protein GATase domain signature 348 359 - -
Cca03g00144 439 TIGRFAM CPSaseIIsmall: carbamoyl-phosphate synthase, small subunit 51 418 IPR006274 GO:0004088|GO:0006207|GO:0006541
Cca03g00144 439 SUPERFAMILY Carbamoyl phosphate synthetase, small subunit N-terminal domain 50 194 IPR036480 -
Cca03g00144 439 Gene3D - 49 197 IPR036480 -
Cca03g00144 439 PRINTS Anthranilate synthase component II signature 279 288 - -
Cca03g00144 439 PRINTS Anthranilate synthase component II signature 306 317 - -
Cca03g00144 439 PRINTS Anthranilate synthase component II signature 391 404 - -
Cca03g00144 439 Pfam Carbamoyl-phosphate synthase small chain, CPSase domain 53 177 IPR002474 -
Cca03g00144 439 PRINTS Glutamine amidotransferase superfamily signature 279 288 - -
Cca03g00144 439 PRINTS Glutamine amidotransferase superfamily signature 306 317 - -
Cca03g00144 439 PRINTS Glutamine amidotransferase superfamily signature 391 404 - -
Cca03g00144 439 Gene3D - 198 420 IPR029062 -
Cca03g00144 439 CDD GATase1_CPSase 237 413 IPR035686 -
Cca03g00144 439 SUPERFAMILY Class I glutamine amidotransferase-like 205 418 IPR029062 -
Cca03g00144 439 ProSiteProfiles Glutamine amidotransferase type 1 domain profile. 236 422 - -
Cca03g00144 439 Hamap Carbamoyl-phosphate synthase small chain [carA]. 49 420 IPR006274 GO:0004088|GO:0006207|GO:0006541
Cca03g00144 439 SMART CPSase_sm_chain_2 49 179 IPR002474 -
Cca03g00144 439 PANTHER CARBAMOYL-PHOSPHATE SYNTHASE ARGININE-SPECIFIC SMALL CHAIN 30 419 - -
Cca03g00144 439 PANTHER CARBAMOYLTRANSFERASE FAMILY MEMBER 30 419 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca03g00144 Cca-Chr3 2069132 2072396 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca03g00144 K01956 - gmx:100806168 822.387