Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca03g00140 ATGCATTTAGCACGATGGCGAAACTTCTCGTCTTTGAAGAATCACCTTATTCCCTCTGTTACGCATGTATCCGCGTTTCATTCCACTCCTTGCTCCTGTCACAATTGGAAGAACAAATTCAACTCCGATGTAAATAAAGGTCAACAACAATCTAAGAATCACATAAAATACATTACACGTCAAAAACGTGCTGATGCAAAGAAAGCTCTGAATAGTCTTCTTTACAATAGTGGAGCCTCTAAATTTTCATTTGAGGACAAGTATGGATTTCAAGGTAGGTATTCCAATAAAGGTCAACCAAAGTCTGGTCAGCGATCTGATGGAAAACCACAGAAGAAAACTAAACGAAAAATCAGAAGAGAAGGTTTTTCTGAGGACTTTGATGGCCATCCTGAGCAAATATTCGAGGCAACATTTGGTAACAGATGTTATACCTGGTCCTTTAACAATTGGAGGGGTTCTTCTTCCGAACATTCCACATCTGGGTTTGAATGGAGGGAACATTCAAATACATCAAACAAGTGGAAAAATGAAAGTGATGTTGAGGATGACGATGATGCTTCATGTTGTGTAGGATCAAGTTCTGATAGAACTATTCTTGGTCTGCCTCCAACAGGTCCATTAAAGATCGAAGATGTTAAAAATGCTTTCCGGTTATCAGCTTTAAAATGGCATCCTGATAAGCATCAAGGCCCTTCCCAGGCAATGGCTGAAGAAAAATTCAAACTGTGTGCAAGTGCATACAAAACATTATGCAATGCTCTCTCCCCATCTTAG 777 0.3951 MHLARWRNFSSLKNHLIPSVTHVSAFHSTPCSCHNWKNKFNSDVNKGQQQSKNHIKYITRQKRADAKKALNSLLYNSGASKFSFEDKYGFQGRYSNKGQPKSGQRSDGKPQKKTKRKIRREGFSEDFDGHPEQIFEATFGNRCYTWSFNNWRGSSSEHSTSGFEWREHSNTSNKWKNESDVEDDDDASCCVGSSSDRTILGLPPTGPLKIEDVKNAFRLSALKWHPDKHQGPSQAMAEEKFKLCASAYKTLCNALSPS 258
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca03g00140 258 MobiDBLite consensus disorder prediction 161 181 - -
Cca03g00140 258 SMART dnaj_3 194 256 IPR001623 -
Cca03g00140 258 CDD DnaJ 199 253 IPR001623 -
Cca03g00140 258 SUPERFAMILY Chaperone J-domain 193 253 IPR036869 -
Cca03g00140 258 MobiDBLite consensus disorder prediction 157 181 - -
Cca03g00140 258 PANTHER CHAPERONE DNAJ-DOMAIN SUPERFAMILY PROTEIN 1 257 - -
Cca03g00140 258 MobiDBLite consensus disorder prediction 93 126 - -
Cca03g00140 258 Pfam DnaJ domain 199 253 IPR001623 -
Cca03g00140 258 PANTHER CHAPERONE DNAJ-DOMAIN SUPERFAMILY PROTEIN-RELATED 1 257 - -
Cca03g00140 258 Gene3D DnaJ domain 167 256 IPR036869 -
Cca03g00140 258 ProSiteProfiles dnaJ domain profile. 195 256 IPR001623 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca03g00140 Cca-Chr3 2032473 2038878 Transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca03g00140 - - gmx:100526896 466.848