Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca03g00132 ATGGGCACTTTGTATCAGATTACACTTGTGAACATAGTTCTTTATGTTTCATTATTCATGAATAGAACAAACACCTTGCCAGTGGACCTAACACTTGGTTTCACTGAACTCCCACTAAACACCTCCAATTTCGACCATCACAAACCCTACGACGTACCCGTAACACAACGCTACAGCTTCATAGATGGAGTGCACAAACTGTGGGTATATTCCACAGACAAACCTCTCTCCCAAAATAGCACAACAAGGCCTAGATCCGAAATCCGCATTAGAGGCTATGATTATTCCTCTGGGGTGTGGCAATTTCAAGGGCAGGGGTTTGTGCCATATGGTACCTCTGGCGTGTGCATCATGCAAGTGTTTGGGGCAGATTATCCTCGTGCGACAACCCTCATGGTTAGAACCTACAATAATACACTTTCGTATTATAAGGCTCCAATCCTTGTTCCAAACATATGGGGGAGATGGTTTCAGTTAAACGTGATCCACGATGTGGAGGCCTCTAATGTGAAGGTTTATTTAGATGGTGTTCAGGTTTACGAAGCAACGGGGTATGGTGGTTTCTCCCACTACTTCAAATTTGGAGTGTACACACAAAATGATCCTTCTAATTACATGGAGTCTCGGTGGAGAGGAGTTCGAGTTCTCAAAAAGGTTTATCATTGA 666 0.4354 MGTLYQITLVNIVLYVSLFMNRTNTLPVDLTLGFTELPLNTSNFDHHKPYDVPVTQRYSFIDGVHKLWVYSTDKPLSQNSTTRPRSEIRIRGYDYSSGVWQFQGQGFVPYGTSGVCIMQVFGADYPRATTLMVRTYNNTLSYYKAPILVPNIWGRWFQLNVIHDVEASNVKVYLDGVQVYEATGYGGFSHYFKFGVYTQNDPSNYMESRWRGVRVLKKVYH 221
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca03g00132 221 Gene3D - 25 218 - -
Cca03g00132 221 SUPERFAMILY Concanavalin A-like lectins/glucanases 52 205 IPR013320 -
Cca03g00132 221 PANTHER BINDING PROTEIN, PUTATIVE, EXPRESSED-RELATED 8 218 - -
Cca03g00132 221 Pfam Alginate lyase 49 215 IPR014895 -
Cca03g00132 221 PANTHER BINDING PROTEIN, PUTATIVE, EXPRESSED-RELATED 8 218 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca03g00132 Cca-Chr3 1906444 1907213 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca03g00132 - - gmx:100803497 405.986
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca03g00132 03 1906444 1907213 Cca03g00132 03 1906444 1907213 ECH