Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca03g00124 ATGGTTATGGTTATGGAGAACGCAGGGAATTTAGACGCGGCCATAGAGCAATTGCTGAATGCGGAGAAGCATGCCAGGCTCGCCGGCGACGTCGCCGCCACCAGAAACGCCGTCACGGAAATTTTACGGCTATGCTTCGAAGCGCGTGCCTGGAAAACTCTCAATGACCAGATTGTTCTGTTATCAAAACGACGTGGTCAGCTTAAGCAGGCTGTGACAGCAATGGTCCAGCAGGCTATGAAATATATTGATGAGACACCAGATCTTGAAACTCGTATAGAACTCATCAAAACCTTGAACAGTGTATCTGCAGGAAAGATATATGTGGAGATTGAGAGAGCTCGGTTGATCAAGAAACTTGCAAAGATTAAGGAAGAACAAGGGCTTATAGCTGAAGCTGCTGATTTGATGCAAGAAATTGCGGTGGAAACTTTTGGTGCCATGGCCAAAACTGAGAAAATTGCTTTCATTCTTGAACAAGTTCGTTTGTGTCTTGACTGTCAGGATTATGTTCGTGCACAAATACTCTCAAGAAAGATTAGTACAAGAGTATTTGATGCCGATGTTTCAAAGGAAAAGAAAAAGCCTAAAGAAGGTGATAATGTTGTTGAGGAAGCTCCTGCTGATATACCATCTCTACCAGAGTTGAAGCGGAGCTATTATGAACTAATGATTCGGTATTATTCCCATAAAAATAATTATCTTGAAATTTGCCGTTGCTACAAGGAAATATATGAGGTTCCATCCGTCAAAGAGAACCCTGCCGAGTGGATTCCAATCCTGAGGAAAATATGTTGGTACTTGGTTCTATCACCACATGATCCAATGCAGTCAAGCCTTCTCAATTCCACCTTGGAGGATAAGAATCTGTCTGAGATTTCAAACTTTAAGTTACTGTTGAAACAGTTGGTCACTATGGAGGTTATCCAGTGGACAGCTCTTTGGGATGCATACAAGGATGAGTTCAAGAACGAGAATAACTTTGGGAAAAAATTGGGTGAAAAAGCAGCAGAAGATCTGAAGGAAAGAGTAATTGAACATAATATTATTGTTATATCAAAATACTATGCAAGGATTACTTTGAAGAGACTGGCAGAGCTTTTGTGTCAGAGTGTTCAGGAAGCTGAGAAGCATCTTTCAGATATGGTTGTTTCTAAGACATTGGTAGCGAAGATTGATAGACCCATGGGAATAGTTTGTTTCCAATCAGCCAAGGATAGCAATGACATTCTTAACTCATGGGCAGCAAACTTGGAGAGACTGCTTGATCTTGTGGAGAAGAGCTGCCATCAAATACACAAGGAAACCATGGTGCATAAAGCTGCCTTGAAGGTTTAA 1338 0.4148 MVMVMENAGNLDAAIEQLLNAEKHARLAGDVAATRNAVTEILRLCFEARAWKTLNDQIVLLSKRRGQLKQAVTAMVQQAMKYIDETPDLETRIELIKTLNSVSAGKIYVEIERARLIKKLAKIKEEQGLIAEAADLMQEIAVETFGAMAKTEKIAFILEQVRLCLDCQDYVRAQILSRKISTRVFDADVSKEKKKPKEGDNVVEEAPADIPSLPELKRSYYELMIRYYSHKNNYLEICRCYKEIYEVPSVKENPAEWIPILRKICWYLVLSPHDPMQSSLLNSTLEDKNLSEISNFKLLLKQLVTMEVIQWTALWDAYKDEFKNENNFGKKLGEKAAEDLKERVIEHNIIVISKYYARITLKRLAELLCQSVQEAEKHLSDMVVSKTLVAKIDRPMGIVCFQSAKDSNDILNSWAANLERLLDLVEKSCHQIHKETMVHKAALKV 445
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca03g00124 445 PANTHER 26S PROTEASOME NON-ATPASE REGULATORY SUBUNIT 12 HOMOLOG A-LIKE 5 444 - -
Cca03g00124 445 ProSiteProfiles PCI domain profile. 236 406 IPR000717 -
Cca03g00124 445 PANTHER 26S PROTEASOME NON-ATPASE REGULATORY SUBUNIT 12/COP9 SIGNALOSOME COMPLEX SUBUNIT 4 5 444 IPR040134 -
Cca03g00124 445 SUPERFAMILY "Winged helix" DNA-binding domain 334 411 IPR036390 -
Cca03g00124 445 Gene3D - 333 410 IPR036388 -
Cca03g00124 445 Pfam PCI domain 295 402 IPR000717 -
Cca03g00124 445 SMART PINT_4 335 421 IPR000717 -
Cca03g00124 445 SMART motif in proteasome subunits, Int-6, Nip-1 and TRIP-15 335 421 - -
Cca03g00124 445 Pfam 26S proteasome regulatory subunit RPN5 C-terminal domain 408 440 IPR040896 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca03g00124 Cca-Chr3 1754953 1761559 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca03g00124 K03035 - gmx:100793755 818.92
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca03g00124 03 1754953 1761559 Cca03g00124 03 1754953 1761559 ECH