Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca03g00115 ATGGCTTCAACTTCAATAACTACTTTCTCCGTCTACTCGAAATCCCAACCCAAGTTCATCAATCTGCTTCCGCAGCCACTGATTCACACCCGCAACAAGCGCACATCAATTTCGTTTCAGCCAGCCACAGTTCGCGCCACCCTTTTCTCAACGCTCACTTGTTCCCACACCCCTTCAACGCCCTCTTCGGATTTTTCACCGGGAAGGACTTTATCCAAGTTCCTCTCAGAAAAGGTCGCATTTTTCCTCATTGGGTCGTTTCTCTTCTTGGGTTGCTTCGGAAAAAGAGCAGCTTTTGCGGAAGCAACGCCTTCGGTGGGTTCTGGCGCAGTGTTGGAGGAGAAGATGAAGCTTTCCGAAGAGAAAAGCGAGGAGGAGGAAATGTGGGAGCAGGTTTTGGAGAAGGATCCGAAAAATGTTGAGGCTCTTAAGGTGGTCTTGTATGGGAAGATTAGGAGAGGGAAGTCCAAGGAGGCTGTGAAATTTGTGGAGGATTTGATTGCTGTGGAGCCCAACGAGGTTGAGTGGAGGCTTTTGCTGGCACTTTGTTACGAGACTATGGGGCAATTGAGCAAGGCTAAAAAATTGTTTAGGGAAATCTTGAAGAAAAGGCCTCTTCTAGTCAGAGCTTTGCATGGTTTGGCTATGGCAATGCACAAAAACCGGGAAGGTCCTGCTGTATTTGAAATGCTAAATAATGCTCAAGAGTTAGCTTCTCGTGAAAACAGAGTTACCGAGGAGAGAAATATAAGAATCTTAATTGCGCAAATGCATGTTGTCCAGGGTAATTTGGAGGAGGGCTTAAAAAGATTTCAAGATTTGATTGATCAAAATCCTCGAGATTTTAGGCCTTATATTTGCCAGGGAATAATATACAGTCTCCTGGGTAAAAATGATGAAGCTGCACAGCAATTTGAAACATATCAAACTCTTGTTCCTGAAGAATTTCCTCAGAGGGGATTTCTTGATGATGTTGCCATAGCAGCAAAAAAAACATCACTGGAACAGTTTAAGAAGGAATTTAAAGATCAAATTTCTTCCCGGAAACAGAGATAA 1056 0.4394 MASTSITTFSVYSKSQPKFINLLPQPLIHTRNKRTSISFQPATVRATLFSTLTCSHTPSTPSSDFSPGRTLSKFLSEKVAFFLIGSFLFLGCFGKRAAFAEATPSVGSGAVLEEKMKLSEEKSEEEEMWEQVLEKDPKNVEALKVVLYGKIRRGKSKEAVKFVEDLIAVEPNEVEWRLLLALCYETMGQLSKAKKLFREILKKRPLLVRALHGLAMAMHKNREGPAVFEMLNNAQELASRENRVTEERNIRILIAQMHVVQGNLEEGLKRFQDLIDQNPRDFRPYICQGIIYSLLGKNDEAAQQFETYQTLVPEEFPQRGFLDDVAIAAKKTSLEQFKKEFKDQISSRKQR 351
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca03g00115 351 Gene3D Tetratricopeptide repeat domain 111 329 IPR011990 GO:0005515
Cca03g00115 351 SUPERFAMILY TPR-like 126 314 IPR011990 GO:0005515
Cca03g00115 351 Pfam Tetratricopeptide repeat 256 313 - -
Cca03g00115 351 PANTHER OS05G0182100 PROTEIN 5 340 - -
Cca03g00115 351 SMART tpr_5 248 281 IPR019734 GO:0005515
Cca03g00115 351 SMART tpr_5 282 315 IPR019734 GO:0005515
Cca03g00115 351 SMART tpr_5 174 207 IPR019734 GO:0005515
Cca03g00115 351 PANTHER TETRATRICOPEPTIDE REPEAT PROTEIN 5 5 340 - -
Cca03g00115 351 Pfam Tetratricopeptide repeat 152 211 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca03g00115 Cca-Chr3 1584025 1587637 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca03g00115 - - gmx:100795327 597.816