Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca03g00110 ATGCTCTGTGTTTCGCGGCTAAGAAAGACGTGGAAAAATAATCGAATGGAATCCAACGATTCTAGTGTTTGCTCGGAATCGATGCTTCCGAGCGAATCGCACCTGAAAATCTTAAAAAATGCTCCTTGGCTATCAGTGCCACAGTTTGGGGACTGGGATCAGAAGGGACAAGTGCCAGACTACTCTCTGGATTTCTCTAAAATTCGGGAAATGAGGAAGCAAAACAAGACAAATATTTCAAGGGCAAGTCTTGGTAATGAAGAGGAACTGATATCTGCTACCACTAACAATACAAACACTGTCGACAGTGAGCACCAGCATCCCCACTACCACCAAACCAACTCTCCAACTACAAGGAGGAGCTTCCTGAGCTACTTCAACTGTTGCGTAAAAGCTTGA 399 0.4461 MLCVSRLRKTWKNNRMESNDSSVCSESMLPSESHLKILKNAPWLSVPQFGDWDQKGQVPDYSLDFSKIREMRKQNKTNISRASLGNEEELISATTNNTNTVDSEHQHPHYHQTNSPTTRRSFLSYFNCCVKA 132
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca03g00110 132 PANTHER PATHOGENIC TYPE III EFFECTOR AVIRULENCE FACTOR AVR AVRRPT-CLEAVAGE: CLEAVAGE SITE PROTEIN 39 131 - -
Cca03g00110 132 PANTHER RPM1-INTERACTING PROTEIN 4 (RIN4) FAMILY PROTEIN 39 131 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca03g00110 Cca-Chr3 1509631 1512759 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca03g00110 - - gmx:100796591 182.57
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca03g00110 03 1509631 1512759 Cca03g00110 03 1509631 1512759 ECH