Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca03g00105 ATGCAATGCAACCCTTCTTTTTCACATTTTCCTTTTCAGGACGCCAATTGTGGAAACACGCTCTTGATCTCTCTTCAAGGCCTTGTTGAGGATGGATTGCTGGAGAAACACGAGCTTCCCCAACCAATTGATGCAGAGCGCGTGAATTTTTCACTCGTTGCTGATCTTAAGGATCCTTTGATAACTAAGGCTGCAGAGAGGCTCATTTCAAGTGAAGGGGAACTCAAAACACAGCTTGAGAATTTTCGCAAGGACCCAAATATATCGAGTTGGCTTGAAGATGCAGCCTATTTTGCTGCTATTGACGACAGTTACAACACAATCAGCTGGTACAATTGGCCTGAACCTTTAAGAAATCGCCATCTTGTAGCTCTAGAAGATATTTACCAACAAAAGAGAGATTTTATAAATGTATTTATTGCCCAACAGTTCTTATTCCAAAGGCAGTGGCACAAAGTTCGCAGCTATGCACAGAGTAGGGGAATCAGCATAATGGGAGACATGCCAATATATGTTGGTTATCATAGTGCAGATGTTTGGGCAAATAAGAAACAGTTTTTACTGAACAAGAAGGGCTTTCCTCTTTTAGTTAGTGGTGTTCCTCCTGATGCATTCAGCGAAACTGGTCAGCTATGGGGCAGCCCCCTGTATGATTGGAAAGCAATGGAGAAAGATGGGTATTCATGGTGGATACGTCGCATACGACGTGCACAAAATTTATTTGATGAATTTAGGATTGACCACTTTAGAGGATTTGCTGGATATTGGGCTGTACCCTCTGAAGCAAAAATAGCTATGCTTGGAAAGTGGAAGGTCGGACCTGGAATGTCCTTATTTGATGCCATTTTCAGAGCTGTTGGAAGGATTAATATTATAGCAGAAGACTTGGGAGTTATCACTGAGGATGTAGTCCAACTAAGAAGATCCATTGGAGCACCTGGAATGGCTGTTCTCCAGTTTGGGTTTGGAGGTGATGCTAATAACCCTCATTTGCCTCATAATCATGAGTGCAATCAAGTTGTCTATACAGGGACTCATGATAATGACACAATTGAAGGTTGGTGGGAAGCTTTGAACCAAGTAGAGAAAGCCAATGCTTTGAATTATCTTTCATTAAAAGGGGAAGATGACATTTCATGGGCACTAATCCAGAGAGTATTGGCTTCTGTTGCTCAAACAGCAATAATACCTATGCAAGATGTTCTTGGATTGGGTAGTTCTGCCAGGATGAATATTCCAGCTACTCAGTTTGGGAACTGGGGTTGGAGAATTGCAAGTTCGGTGAGCTTTGATGGCCTGGAGAGAGAGGCAAACAGACTCAGGGAAATGCTTTTAATGTATGGCCGGCTTTGA 1353 0.4242 MQCNPSFSHFPFQDANCGNTLLISLQGLVEDGLLEKHELPQPIDAERVNFSLVADLKDPLITKAAERLISSEGELKTQLENFRKDPNISSWLEDAAYFAAIDDSYNTISWYNWPEPLRNRHLVALEDIYQQKRDFINVFIAQQFLFQRQWHKVRSYAQSRGISIMGDMPIYVGYHSADVWANKKQFLLNKKGFPLLVSGVPPDAFSETGQLWGSPLYDWKAMEKDGYSWWIRRIRRAQNLFDEFRIDHFRGFAGYWAVPSEAKIAMLGKWKVGPGMSLFDAIFRAVGRINIIAEDLGVITEDVVQLRRSIGAPGMAVLQFGFGGDANNPHLPHNHECNQVVYTGTHDNDTIEGWWEALNQVEKANALNYLSLKGEDDISWALIQRVLASVAQTAIIPMQDVLGLGSSARMNIPATQFGNWGWRIASSVSFDGLEREANRLREMLLMYGRL 450
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca03g00105 450 Gene3D Glycosidases 2 450 - -
Cca03g00105 450 TIGRFAM malQ: 4-alpha-glucanotransferase 38 438 IPR003385 GO:0004134|GO:0005975
Cca03g00105 450 Pfam 4-alpha-glucanotransferase 14 425 IPR003385 GO:0004134|GO:0005975
Cca03g00105 450 SUPERFAMILY (Trans)glycosidases 8 449 IPR017853 -
Cca03g00105 450 PANTHER 4-ALPHA-GLUCANOTRANSFERASE DPE1, CHLOROPLASTIC/AMYLOPLASTIC 7 450 IPR003385 GO:0004134|GO:0005975
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca03g00105 8 450 Glycoside Hydrolase AT5G64860 74.492 0.0 708
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca03g00105 K00705 - gmx:100795007 856.67
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca03g00105 03 1469559 1474842 Cca03g00105 03 1469559 1474842 ECH