Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca03g00101 ATGGGTGAAGATAGCCCGCGAGTTGGTGGGTTTTCAGCTGGTCTGGCTGTGCTACTGAACGGTGAGGATAGTAACAAAAAATCGCCAAAAACTCGGCTTCTTTCTTGCTGTGACGATTTGGGTCAACAGTCTGTGGAGCGAACCCTTGAGTATGTGTTTGGCCTACCAAACAGATCACTCAATTCATTGACTGGTCCAGTTGATTGTAAGTTTATTCGTTCTGTCATTAAGAATGATTTCTTAAAATATAATGTGAAATTGAGTGATTCTTATGGTGAAAGAGATGGGATTTGCTTTAATAGTAAAACTGGTAATGGGCATGATGTTATTGGCCTAGAAGAAACCAGCATCTGTGGTGATATTAAAGTCATCAAGTCTCCTTTCCTTATAGAGAGCTCGGCTATGTTTAGTAGTGCCAGGGCTAGTGCTTGTGTTTGGAAAGGAAAATGGATGTATGAAGTTATGTTGGAAACATCTGGCATACAGCAGCTTGGTTGGGCCACTCTTTCTTGCCCTTTCACTGACCATAAAGGTGTTGGTGATGCCAATGATTCATATGCATATGATGGGAGACGAGTTAGCAAGTGGAACAAGGATGCTGAGACATACGGTCAGTCATGGGTTGTTGGTGATATCATTGGATGTTGTATAGATTTAAATCGAGATGAAATAATATTCTACAGGAATGGTAATTCACTTGGGGTGGCATTCCAAGGAATTCGAAAAATGGGTCCTGGTTTTGGTTATTATCCCGCAGTTTCTCTCTCCCAAGGGGAAAGATGTGAGTTGAACTTTGGAGCTCGGCCCTTCAAGTATCCAATTGAAGGCTACCTTCCTCTTCAAGCTCCTCCCTCTAAGAGCTACTTAGTCACCCAGTTGCTGCAATGCTGGTCAAGGCTGTTGGACATGCATTCAGTGGAACGAGCTGAGCATTCTTTAGTTCAGAAGTTGAGAAGGGTGAAGAGGTTTGTTTCATTGGAAGAGATTTTCCATCCTGCTTCTTATGCTATATGTGAGGAACTATTTTCTATACTTGAAGCAGATGTGGGGATCACAGAGTATATGGTTTGGGGTCCACTGTTGTCTTTCATGTTTGAAGTTTTTGGTTTGCATGCACCCCATGATTACCCAAGCTTGGATAAAGTAGTTGAGGTTCTACTACAATTTCAAGGATCACATGTGCTATTTGAACACATCCTAAATGCCCTTTCTTGCGGTTGTAAAATAGCTTCATTAATTCTAACCGAATGTCCTTACTCTGGATCATATTCTCACCTTGCATTGGCATGTCATCTACTAAGACGAGAGGAACTTATGATGCTTTGGTGGAAGTCACCAGATTTTGAATTCTTGTTTGAAGGTTTTCTGTCACAAAAGACTCCAAACAAACAGGATCTTGACTCCATGATACCAACTGTTTGGTGGCCTGGTTCATGTGAAGATGCATCTTATGAAGGTAACATGATGTTGACAACCACAGCTTTGTCTGAATCAATCAGCAAGATTGAGGAGAAGCATAGGGATCTCTGTCGCTTAGTGATACAATTTATACCTCCTACGAATCCTCCCCAGTTACCTGGTGCTGTATTTAGGACATTTTTACAGAGCCTTCTACTGAAGAACAGAGGAGCAGAACGAAATATTCCACCCCCTGGAGTTTCTAGTAACTCGGTTCTTGTTTCAATTTACACAGTTGTACTCCATTTTCTTTCTGAAGGATTTGCCTTGGGTGACATCTGTGGCTGGTTAAAGAGCTGCAAAGCAGATGTTGGTTTCCTTCATAGAGGTGGTGAACAAAGTTTTCCTGTACATTTATTTCTGAAAAATGATCCCCACAGAGCTGATATTTCCAGGCTTGGGGGATCCTATGGCCATTTATCAAAGCTACACCCAACAATCGATCATGAAATGGAAATGATTCAATGGGATGAAGGTTGCATGGATAGTGAAGAAACCAGGGTCACTCATTCAACCAGGGAAAAGCCATGCTGTTGTTCTAGTTATGATTCTGATTTTACAAGGAACTTCAAGGTTCCTGCTAAATACCTGGCCAAAGGTTCTCGTGGTCATTGTAGCTCTATTCCAGAAAGACCTGCTCATGTCGCTGCTGAATGCAGTGATGGGAGTTTGAATGATGAGATAACAGATAAACCTAGCTCCAGTGATCAATCTGAACCTGAGTATGGTTACCGCCAAGTGCACCATATGAAGTCTGTACCAAAGGATACTAATATGTCTACAGCTACACTACGAGAAGAAGAGCTACTTGATGCTTTGCTATGGTTGTATCATGTTGGTCTTGCTCCGAATTTTAAGCAGGCATCATACTACATGACTCATCAGGCACAGTCAATTTCCCTTTTGGAGGAAACTGATAAGCAAATAAGAGAACGAGCTTACAGTGAGCAATTGAAGCATTTGAAAGAAACTCGTAATGAATATAGAGAAGAGGTTATTGATTGTGTTAGGCATTGTGCCTGGTATCGCATCTCTCTATTTTCTCGGTGGAAGCAGAGAGGAATGTATGCAATGTGCATGTGGGTTGTACAGTTGCTACTGGTTCTTAGCAATATGGATTCGGTGTTTATCTACATCCCTGAATATTATCTGGAAGCTTTGGTTGATTGCTTTCATGTGTTGCGGAAAAGTGATCCTCCCTTTGTTCCATCCACAATTTTCATCAAGCGAGGACTTGCTTCATTTGTCACCTTTGTAGTTACCCATTTCAACGATCCAAGAATATCAAGTGCAGATCTTAGGGATCTTCTTCTTCAGTCTATATCTGTCCTCGTGCAGTACAGGGAGTATTTGGCTACTTTTGAGAGCAATGAGGCAGCCACCCAAAGGATGCCAAAAGCTTTATTATCAGCATTTGATAACAGATCTTGGATTCCAGTGACAAACATACTACTACGATTATGCAAGGGTTCTGGTTTTAGTTTTTCAAAGAATGGAGAATCATCTTCGTCATCAGTTCTTTTCCAAAGGTTGCTAAGAGAAGCTTGCATAAGTGACGAAGGATTGTTTTCATCTTTTGTTAACCGTCTGTTTAATACACTCAGCTGGACCATGACTGAATTCTCAGTTTCTGTTCGAGAAATGCAAGAAAAGTACCAGGTAATAGAGTTTCAGCAAAGGAAATGCTGTGTCATATTTGATCTTTCATGTAATCTTACGAGGATTCTAGAGTTCTGCACTCGTGAGATTCCTCAAGCATTCCTGTCTGGACCTGACACAAACCTACGAAGGTTAACGGAGTTGGTTGTATTTATCCTAAATCACATTAGTTCTGCAGCCGATGCTGAATTCTTTGACTTGTCCCTCAGACGGCATAGCCAATCTTCAGAAAAGGTGAATCGAGGCATGATATTGGCACCTCTAGTAGGGATCATCTTAAATTTATTGGATGCTACAAGTTCGGCAGAATATCGAGAAAACAATGATCTCTTGGATGTTTTTGCAAGCATGGACTGTCCAGATACTGTGCAGTACGGATTCCAGTATCTTTTGGATTATAACTGGGATGGATCTTTTCGGGGGGGAGCTTATGCGGCAAAATATGACCAGCTAGAGAACTTTCTAAGTCTCCTTACCTGCCGCACTGTGTTACAACATGATAAAGTGGATAGTGTGGAAGATACAGATCTTGATGATAGCTTGTGCTGCATATGTTACGCTTGTGAAGCTGATGCTCAAATTGCACCTTGTTCACACAGGTCTTGTTATGGCTGTATAACGAGGCACCTTTTGAACTGCCAGAGATGTTTCTTTTGCAACACAACAGTGACAGATGTTAGCAAAATTGGTTAG 3810 0.4147 MGEDSPRVGGFSAGLAVLLNGEDSNKKSPKTRLLSCCDDLGQQSVERTLEYVFGLPNRSLNSLTGPVDCKFIRSVIKNDFLKYNVKLSDSYGERDGICFNSKTGNGHDVIGLEETSICGDIKVIKSPFLIESSAMFSSARASACVWKGKWMYEVMLETSGIQQLGWATLSCPFTDHKGVGDANDSYAYDGRRVSKWNKDAETYGQSWVVGDIIGCCIDLNRDEIIFYRNGNSLGVAFQGIRKMGPGFGYYPAVSLSQGERCELNFGARPFKYPIEGYLPLQAPPSKSYLVTQLLQCWSRLLDMHSVERAEHSLVQKLRRVKRFVSLEEIFHPASYAICEELFSILEADVGITEYMVWGPLLSFMFEVFGLHAPHDYPSLDKVVEVLLQFQGSHVLFEHILNALSCGCKIASLILTECPYSGSYSHLALACHLLRREELMMLWWKSPDFEFLFEGFLSQKTPNKQDLDSMIPTVWWPGSCEDASYEGNMMLTTTALSESISKIEEKHRDLCRLVIQFIPPTNPPQLPGAVFRTFLQSLLLKNRGAERNIPPPGVSSNSVLVSIYTVVLHFLSEGFALGDICGWLKSCKADVGFLHRGGEQSFPVHLFLKNDPHRADISRLGGSYGHLSKLHPTIDHEMEMIQWDEGCMDSEETRVTHSTREKPCCCSSYDSDFTRNFKVPAKYLAKGSRGHCSSIPERPAHVAAECSDGSLNDEITDKPSSSDQSEPEYGYRQVHHMKSVPKDTNMSTATLREEELLDALLWLYHVGLAPNFKQASYYMTHQAQSISLLEETDKQIRERAYSEQLKHLKETRNEYREEVIDCVRHCAWYRISLFSRWKQRGMYAMCMWVVQLLLVLSNMDSVFIYIPEYYLEALVDCFHVLRKSDPPFVPSTIFIKRGLASFVTFVVTHFNDPRISSADLRDLLLQSISVLVQYREYLATFESNEAATQRMPKALLSAFDNRSWIPVTNILLRLCKGSGFSFSKNGESSSSSVLFQRLLREACISDEGLFSSFVNRLFNTLSWTMTEFSVSVREMQEKYQVIEFQQRKCCVIFDLSCNLTRILEFCTREIPQAFLSGPDTNLRRLTELVVFILNHISSAADAEFFDLSLRRHSQSSEKVNRGMILAPLVGIILNLLDATSSAEYRENNDLLDVFASMDCPDTVQYGFQYLLDYNWDGSFRGGAYAAKYDQLENFLSLLTCRTVLQHDKVDSVEDTDLDDSLCCICYACEADAQIAPCSHRSCYGCITRHLLNCQRCFFCNTTVTDVSKIG 1269
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca03g00101 1269 Coils Coil 797 817 - -
Cca03g00101 1269 CDD SPRY_RNF123 138 266 IPR035773 -
Cca03g00101 1269 SUPERFAMILY RING/U-box 1211 1264 - -
Cca03g00101 1269 SMART SPRY_3 147 269 IPR003877 GO:0005515
Cca03g00101 1269 ProSiteProfiles Zinc finger RING-type profile. 1221 1255 IPR001841 -
Cca03g00101 1269 Pfam SPRY domain 149 267 IPR003877 GO:0005515
Cca03g00101 1269 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 1214 1268 IPR013083 -
Cca03g00101 1269 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RNF123 41 1268 - -
Cca03g00101 1269 Gene3D - 118 298 IPR043136 -
Cca03g00101 1269 Pfam E3 ubiquitin-protein ligase RKP N-terminus 1 138 IPR045737 -
Cca03g00101 1269 MobiDBLite consensus disorder prediction 705 731 - -
Cca03g00101 1269 CDD RING-HC_RNF123 1219 1259 - -
Cca03g00101 1269 Pfam Ubiquitin elongating factor core 754 958 IPR019474 GO:0000151|GO:0006511|GO:0016567|GO:0034450
Cca03g00101 1269 ProSiteProfiles B30.2/SPRY domain profile. 77 270 IPR001870 -
Cca03g00101 1269 SUPERFAMILY Concanavalin A-like lectins/glucanases 131 282 IPR013320 -
Cca03g00101 1269 MobiDBLite consensus disorder prediction 712 727 - -
Cca03g00101 1269 PANTHER RING FINGER AND SRY DOMAIN-CONTAINING 41 1268 IPR045129 GO:0004842
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca03g00101 K12169 - gmx:100800617 2464.88
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca03g00101 03 1433641 1442508 Cca03g00101 03 1433641 1442508 ECH