Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca03g00098 ATGAAGAAAGGAACCAAGAGAAAAGCGAGGCACGACGAAGAGCTCAAACAAACCAAGAAGCGATCCACCAAAATTAAGCCTCCAAAGCCCGACGAGTACTTCGAGGATAAGCGCAACTTGGAAGACTTGTGGAGAGAAACATTCCCTGTCGGAACAGAGTGGGATCAATTGGATTCTGTATACCAATACAAGTGGAATTTCTCTAACCTCGAAAATGCGTTTGAAGAGGGTGGTGTATTGCATGGGAAAAGAGTTTATCTATTTGGCTGCACCGAGCCTCAATTGGTCTGGTTCAAAGATGAAAGCAAAGTTGTCTGCATACCTGTTGTTGTGGCTGTTGTATCACCCTTCCCACCGTCTGATAAAATTGGGATTAACTCAGTTCAGAGAGAGTCTGAAGAGATAATTCCCATGAAACAAATGAAAATGGACTGGGTTCCATATATCCCCCTCGAAGATCGAGAAAGTCAAGTGGATAGATTAAAGTCTCAAATATTTATCTTAAGTTGCACCCAAAGAAGGGCAGCATTGAAACATCTGAAGTTGGATCGTGTAAAGAAATACGAGTATTGCTTGCCTTACTTCTACCAGCCGTTTAAGGAAGACGAACTTGAACAGAGCACCGAAGTTCCAATAATATTTCCAGCAGAGCCAAAGCCGGTTTTCTGTGAATTTGATTGGGAATTAGATGAACTTGAGGAGTTCACTGGCAAGCTCATAGAGGAGGAGGAGTTATCGAGAGATCAAAAAGATACCTTTAAGGAATTTGTCAAAGAAAAAGTACGTGAAGCGAAGAGAGCTAATAGAGAGGCCAGGGAAGCCCGAAGAAAAGCCATTGAAGAAATGAGTGAAGAAACTAAAGCTGCATTTGGGAATATGAGATTTTATAAGTTCTACCCGGTGCAAAGTTCAGATGCGCCTGATGTATCAAATGTTAAGTCTCCATTCATAAACAGGTATTACGGAAAGGCTCACGAGGTTCTGTAA 987 0.4195 MKKGTKRKARHDEELKQTKKRSTKIKPPKPDEYFEDKRNLEDLWRETFPVGTEWDQLDSVYQYKWNFSNLENAFEEGGVLHGKRVYLFGCTEPQLVWFKDESKVVCIPVVVAVVSPFPPSDKIGINSVQRESEEIIPMKQMKMDWVPYIPLEDRESQVDRLKSQIFILSCTQRRAALKHLKLDRVKKYEYCLPYFYQPFKEDELEQSTEVPIIFPAEPKPVFCEFDWELDELEEFTGKLIEEEELSRDQKDTFKEFVKEKVREAKRANREAREARRKAIEEMSEETKAAFGNMRFYKFYPVQSSDAPDVSNVKSPFINRYYGKAHEVL 328
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca03g00098 328 MobiDBLite consensus disorder prediction 7 31 - -
Cca03g00098 328 Gene3D - 1 66 - -
Cca03g00098 328 Coils Coil 1 21 - -
Cca03g00098 328 MobiDBLite consensus disorder prediction 1 31 - -
Cca03g00098 328 Coils Coil 254 288 - -
Cca03g00098 328 PANTHER PROTEIN HEAT INTOLERANT 4-RELATED 1 327 IPR039313 GO:1900034
Cca03g00098 328 PANTHER PROTEIN HEAT INTOLERANT 4-RELATED 1 327 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca03g00098 Cca-Chr3 1402019 1411417 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca03g00098 - - gmx:100801162 559.681
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca03g00098 03 1402019 1411417 Cca03g00098 03 1402019 1411417 ECH
Cca09g02186 09 47026158 47031830 Cca03g00098 03 1402019 1411417 PCT