Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca03g00094 ATGAATAACCTCTTTGtcttcttcttcgcccttcttcttcttcttcttcttcttgcttcttcttcCGCCACCTCCTTCTCCGAGTTCCGATCCCTACTCGAGTTCAAGAAAGGGATAACGCAAGATCCGCTCAAGCTTCTAGAATCATGGACCTCCAACTCCGTCGCCGACTCCGCCGCCACGTGTCCGCCGTGGAAGGGCGTCTTCTGCGACGAGGAGACCGGCAACGTAACCGCCGTGGTGCTCGACCGCCTCAGCCTCGGCGGGGAGCTCAAGCTGCACACGCTGCTCGACCTCAGGATGCTGCGGAACCTCTCACTCGCCGGGAACCACTTCACCGGGAGGCTTCCCCCCGCCTTAGGCTCGCTTACCTCGCTGCAGCACTTGGATCTCTCCGATAACAGATTCTACGGGCCCGTCCCGGCCCGGATCAGCGAGCTTTGGGCCCTAAATTACCTCAATTTGTCTCACAATAAGTTCAAGGGCGGGTTCCCGAGCGGGCTCGGGAACCTCCAACAGCTTCGGGTTCTCGATTTGCGCGCCAACGAGCTATGGGCCGAAATTGGGGAGGTGCTCTCCACGCTCCGCAACGTGGAGCGCGTGGATATGAGCCTGAATCAGTTCTTCGGCGGGCTTTCGCTCTCGGCTGAGAATGTTTCGGGCTTGGCGAACACTGTGCATTTTCTGAACTTGAGTTATAACAACTTGAATGGGCCCTTCTTTGACGGAAGTGCTGTTAGTTTGTTTCGCAACTTGCAGGTTTTGGACTTGAGTAATAACTCTGTTTCGGGGGAGCTTCCTTCTTTTCAGTCTTTGCCCTCGCTTCGCGTTTTGAGGCTTCGCGGGAATCAGTTGTTTGGGTCTGTGCCGGAGGAGCTGTTGCAGACGGACCTGCAGATGGAAGAGGTGGATCTTAGTGTCAATGGGTTTACTGGTTCAATTGCTGTAATCAACTCAACAACTTTAAATATTTTGAATCTTTCATCCAATAGTTTATCAGGCTTATTGCCAACATCTTTGAGTAGATGTTCGGTCATTGACTTGAGCAGGAATATGTTATCTGGTGACATTTCTGTTATACAGAACTGGGAAGCCCCTTTAGAGGTTATTGATCTGAGTTCAAACAAGCTGTCAGGATCATTGCCTCCTAGTTTAGGAACCTATTCAAAACTGTTTACCGTTGACTTAAGTTTAAATGAACTTAATGGATCGATTCCTCGGGGCTTAGTTACTTCACCGTCAGTGACAAGACTAAATCTTTCTGGAAATCAACTTTCAGGGCCACTTCTGCTTCAAGGTTCAGGAGCCAGTGAATTACTACTTATGCCTCCTTATCAACCAATGGAATATCTTGATGTGTCTAATAACTCATTAGAAGGTGTCTTGCCTTCTGAAATAGGTAGGATGGGTGGGCTCAAACTGCTGAATCTGGCAAGGAATGGCTTTTCAGGGCAGCTGCCAAATGAATTGAACAAACTTAATTATTTGGAGTACCTTGATTTGTCTGACAACAAATTTACTGGAAATATTCCTGATAAGCTTTCATCTAGCTTAACTGAATTTAATGTGTCCAATAATGATCTATCTGGTCGTGTTCCTGAAAATTTGCGGCAGTTCTCTCCTTCATCGTTTCGCCCTGGAAATGGAAAGCTAATGTTACCAAATGACTCTCCTGAAGCTTCTTCGGTGTCTGATAACATTCCAGATAATGGTAGACATCATAGTTCAAAGGGTAATATCAGGATAGCAATTATTCTTGCCTCAGTGGGTGCTGCTGTTATGATTGCTTTTGTCTTATTGGCTTATCATCGAACACAATTAAAAGAATTTCATGGAAGaagtgagttcactggccaaaacaccagaagagatgtgaagttgggaggacttACGAGGTCTTCCCTCTTCAAGTTCAATACAAATGTTCAACCCCCAACAACTTCATTGAGCTTTTCAAATGACCACCTGTTGACTTCCAATTCGAGGTCACTCTCTGGTGTACAGTCAGAGTTTGTAACTGAAATTTCTGAGCATGGCTTACCTCAGGGAATGGTGGCTACTAGTTCAGCACCTGTAACTCCTAGTTTGATGGATAACCCTCCGACTTCATCTGGAACGAAGTCTTCTCCAGGTTCCCCATTGTCGTCCTCACCCCGTTTTATTGAGGCTTGTGAAAAGCCAGTGATGTTGGATGTTTACTCACCAGATCGGCTGGCTGGGGAACTGTTTTTCCTGGAGTCTTCCCTAGCATTCACTGCAGAGGAATTATCTCGAGCTCCAGCTGAAGTTCTTGGCAGAAGTAGCCATGGCACTTTATACAAAGCAACTCTGGACAGTGGTCATATGTTGACTGTAAAATGGTTACGAGTGGGATTGGTCAAACATAAAAAGGAATTTGCTAGAGAAGTTAAAAGGATTGGTTCTATGAGGCATCCAAACGTTGTCCCATTACTAGCATACTATTGGGGGCCTCGGGAACAAGAGAGGCTTCTTTTGGCTGACTATATACATGGGGACAGCTTGGCCCTTCATCTCTATGGTAATAGTTAA 2550 0.449 MNNLFVFFFALLLLLLLLASSSATSFSEFRSLLEFKKGITQDPLKLLESWTSNSVADSAATCPPWKGVFCDEETGNVTAVVLDRLSLGGELKLHTLLDLRMLRNLSLAGNHFTGRLPPALGSLTSLQHLDLSDNRFYGPVPARISELWALNYLNLSHNKFKGGFPSGLGNLQQLRVLDLRANELWAEIGEVLSTLRNVERVDMSLNQFFGGLSLSAENVSGLANTVHFLNLSYNNLNGPFFDGSAVSLFRNLQVLDLSNNSVSGELPSFQSLPSLRVLRLRGNQLFGSVPEELLQTDLQMEEVDLSVNGFTGSIAVINSTTLNILNLSSNSLSGLLPTSLSRCSVIDLSRNMLSGDISVIQNWEAPLEVIDLSSNKLSGSLPPSLGTYSKLFTVDLSLNELNGSIPRGLVTSPSVTRLNLSGNQLSGPLLLQGSGASELLLMPPYQPMEYLDVSNNSLEGVLPSEIGRMGGLKLLNLARNGFSGQLPNELNKLNYLEYLDLSDNKFTGNIPDKLSSSLTEFNVSNNDLSGRVPENLRQFSPSSFRPGNGKLMLPNDSPEASSVSDNIPDNGRHHSSKGNIRIAIILASVGAAVMIAFVLLAYHRTQLKEFHGRSEFTGQNTRRDVKLGGLTRSSLFKFNTNVQPPTTSLSFSNDHLLTSNSRSLSGVQSEFVTEISEHGLPQGMVATSSAPVTPSLMDNPPTSSGTKSSPGSPLSSSPRFIEACEKPVMLDVYSPDRLAGELFFLESSLAFTAEELSRAPAEVLGRSSHGTLYKATLDSGHMLTVKWLRVGLVKHKKEFAREVKRIGSMRHPNVVPLLAYYWGPREQERLLLADYIHGDSLALHLYGNS 849
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca03g00094 849 Gene3D Ribonuclease Inhibitor 27 186 IPR032675 -
Cca03g00094 849 Gene3D Ribonuclease Inhibitor 364 434 IPR032675 -
Cca03g00094 849 ProSiteProfiles Leucine-rich repeat profile. 251 273 IPR001611 GO:0005515
Cca03g00094 849 Gene3D Ribonuclease Inhibitor 297 363 IPR032675 -
Cca03g00094 849 MobiDBLite consensus disorder prediction 684 718 - -
Cca03g00094 849 MobiDBLite consensus disorder prediction 532 574 - -
Cca03g00094 849 SUPERFAMILY L domain-like 39 357 - -
Cca03g00094 849 Gene3D Phosphorylase Kinase; domain 1 737 835 - -
Cca03g00094 849 ProSiteProfiles Protein kinase domain profile. 758 849 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cca03g00094 849 Pfam Leucine rich repeat N-terminal domain 28 71 IPR013210 -
Cca03g00094 849 PANTHER OS07G0626500 PROTEIN 2 848 - -
Cca03g00094 849 SUPERFAMILY RNI-like 227 533 - -
Cca03g00094 849 PANTHER OS07G0626500 PROTEIN 2 848 - -
Cca03g00094 849 Pfam Leucine Rich repeats (2 copies) 251 289 IPR025875 -
Cca03g00094 849 Gene3D Ribonuclease Inhibitor 447 545 IPR032675 -
Cca03g00094 849 Pfam Leucine Rich repeat 494 508 IPR001611 GO:0005515
Cca03g00094 849 SUPERFAMILY Protein kinase-like (PK-like) 761 847 IPR011009 -
Cca03g00094 849 MobiDBLite consensus disorder prediction 555 569 - -
Cca03g00094 849 MobiDBLite consensus disorder prediction 684 716 - -
Cca03g00094 849 SMART LRR_typ_2 272 296 IPR003591 -
Cca03g00094 849 SMART LRR_typ_2 171 195 IPR003591 -
Cca03g00094 849 SMART LRR_typ_2 99 122 IPR003591 -
Cca03g00094 849 SMART LRR_typ_2 493 517 IPR003591 -
Cca03g00094 849 SMART LRR_typ_2 123 147 IPR003591 -
Cca03g00094 849 SMART LRR_typ_2 249 271 IPR003591 -
Cca03g00094 849 Gene3D Ribonuclease Inhibitor 187 296 IPR032675 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca03g00094 Cca-Chr3 1341790 1348181 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca03g00094 709 848 Receptor kinase-like Gene Family AT5G01890 34.752 8.95e-15 77.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca03g00094 - - gmx:100802768 1335.47
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca03g00094 03 1341790 1348181 Cca03g00094 03 1341790 1348181 ECH