Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca03g00087 ATGCTCAAGTCCAATTGTGATCCCAATGAGTATACTTATAATATATTGATTGATGGGTTTTGTAAAAGTGATAATGTTAAGGGTGCTCTCGAGATGCTCGATGAAATGGGGCAGAGGGGTATGGTGCCCAGTGAAGTGACTTTTACTGCTATTTGTTCCGGTCTGTGTCATGGGAAGAGGGTGGATGAGGCACAAAGGTTGTTTAATGTGATGAAAGAAAGAGGGTGCCAACCTACTTTTATATCTTATAATGTTTTGATTAATGGTTATTGCAAGTTGGGGAAGTTAGATGAAGCAATTTCAATTCTGCGGTTGTTGGAGAAAGATGGGCTTGAAACTGGACTAAAGGGCTATAGTTCTCTGATTGCTGCGTTTTTTAAGGCGAGGAGATATAATGAAGGGCATTCGTGGTATGGGAAGATGCTTAAGAAGGGTATTGAGCCGGATGTTATTTTGTACACCATTATGATACGCGGTTTGTCGAGTGAGGGGAGGGTTGGTGAAGCTGTCAAGCTGTTGGGTGAGATGACTGAGAGAGGCTTAGTTCCTGATGCTGTTTGTTACAATGAAGTTATTAAAGGTCTCTGTGAGGTTGGTCTTTTGGATCGAGCACGGTCTCTCCAACTTGAGATTTCTGAGCATGAAGGGTTTCAAAATGCTTGCACGCATACGATTCTTATCTGTGACTTGTGTAACAAAGGAATGGTTGGTGAGGCACATAAAATATTTAATCGGATGGAGAAGCTTGGATGTTTACCATCAGTTGTCACCTTCAATGCTCTTATAAATGGACTGTGCAAATCTGGCAAGCTTGAGGAGGCACACCTTTTACTTTACAAGATGGAGATTGGAAGAAGTCCTTCTTTATTCTTCCGTCTTTCTCAGGGTTCTGATCAGGTTCTCAATAGTATTGGTCTCCAGAAAAAGGTGGAGCAAATGTGTGAGGCTGGACAAATTTTGGATGCATACAAGCTTCTCATAAAACTTGCTGATAGCGGGGTTATGCCTGACGTAGTAACATACAACGTTATAATCAATGGCTTTTGCAAGGCTTCTAAGATCAATGGTGCTTTAAAGCTTTTCAAGGATATGCAAAACAAGGGACTCTCAGCTGACTCCATTACTTATGGGACACTTATTGATGGGCTTTTCAGGGTTGACAGAGAAGAGGATGCCTTTAAGATTCATGAGCACATGTTGAAGCATGGGTGTGAACCTAGCTTTGAAGTTTATAGATCTCTAATGACTTGGTTGTCTAGAAAGAGTAAGGTTGCACAGGCCTTCAGTCTTTATTTTGAATGTTTGAAGAACATTCGTGGCCGGGAAGAAGTTTCAATCAATGCTTTGGAAGAATATTTTATCAAAGGAGAACTGGAACAGGCAATTCGAGGTTTACTAGCACTGGACTTCAGGTCTTTGTGCACAAGGAAGGCTGGACGATGCAGTAGACATCTTCCTTTACAGAAACTCAATACAGTTTCTAATGAACTAAAGGGCTGA 1500 0.4133 MLKSNCDPNEYTYNILIDGFCKSDNVKGALEMLDEMGQRGMVPSEVTFTAICSGLCHGKRVDEAQRLFNVMKERGCQPTFISYNVLINGYCKLGKLDEAISILRLLEKDGLETGLKGYSSLIAAFFKARRYNEGHSWYGKMLKKGIEPDVILYTIMIRGLSSEGRVGEAVKLLGEMTERGLVPDAVCYNEVIKGLCEVGLLDRARSLQLEISEHEGFQNACTHTILICDLCNKGMVGEAHKIFNRMEKLGCLPSVVTFNALINGLCKSGKLEEAHLLLYKMEIGRSPSLFFRLSQGSDQVLNSIGLQKKVEQMCEAGQILDAYKLLIKLADSGVMPDVVTYNVIINGFCKASKINGALKLFKDMQNKGLSADSITYGTLIDGLFRVDREEDAFKIHEHMLKHGCEPSFEVYRSLMTWLSRKSKVAQAFSLYFECLKNIRGREEVSINALEEYFIKGELEQAIRGLLALDFRSLCTRKAGRCSRHLPLQKLNTVSNELKG 499
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca03g00087 499 Gene3D Tetratricopeptide repeat domain 1 135 IPR011990 GO:0005515
Cca03g00087 499 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 79 113 IPR002885 -
Cca03g00087 499 Pfam PPR repeat family 8 57 IPR002885 -
Cca03g00087 499 Pfam PPR repeat family 219 267 IPR002885 -
Cca03g00087 499 Pfam PPR repeat family 148 196 IPR002885 -
Cca03g00087 499 Pfam PPR repeat family 336 384 IPR002885 -
Cca03g00087 499 Gene3D Tetratricopeptide repeat domain 213 283 IPR011990 GO:0005515
Cca03g00087 499 Gene3D Tetratricopeptide repeat domain 148 212 IPR011990 GO:0005515
Cca03g00087 499 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 372 406 IPR002885 -
Cca03g00087 499 TIGRFAM PPR: pentatricopeptide repeat domain 256 282 IPR002885 -
Cca03g00087 499 TIGRFAM PPR: pentatricopeptide repeat domain 118 150 IPR002885 -
Cca03g00087 499 TIGRFAM PPR: pentatricopeptide repeat domain 46 79 IPR002885 -
Cca03g00087 499 TIGRFAM PPR: pentatricopeptide repeat domain 221 254 IPR002885 -
Cca03g00087 499 TIGRFAM PPR: pentatricopeptide repeat domain 339 372 IPR002885 -
Cca03g00087 499 TIGRFAM PPR: pentatricopeptide repeat domain 11 45 IPR002885 -
Cca03g00087 499 TIGRFAM PPR: pentatricopeptide repeat domain 374 407 IPR002885 -
Cca03g00087 499 TIGRFAM PPR: pentatricopeptide repeat domain 81 112 IPR002885 -
Cca03g00087 499 TIGRFAM PPR: pentatricopeptide repeat domain 152 185 IPR002885 -
Cca03g00087 499 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 149 183 IPR002885 -
Cca03g00087 499 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 9 43 IPR002885 -
Cca03g00087 499 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 254 288 IPR002885 -
Cca03g00087 499 PANTHER PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN 3, MITOCHONDRIAL 1 281 - -
Cca03g00087 499 PANTHER PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN 3, MITOCHONDRIAL 118 462 - -
Cca03g00087 499 Pfam PPR repeat 74 104 IPR002885 -
Cca03g00087 499 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 44 78 IPR002885 -
Cca03g00087 499 Pfam PPR repeat 118 146 IPR002885 -
Cca03g00087 499 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 114 148 IPR002885 -
Cca03g00087 499 Gene3D Tetratricopeptide repeat domain 288 494 IPR011990 GO:0005515
Cca03g00087 499 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 337 371 IPR002885 -
Cca03g00087 499 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 219 253 IPR002885 -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca03g00087 63 479 Glycosyltransferase AT1G05670 26.374 1.17e-38 148
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca03g00087 - - lang:109340115 694.501