Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca03g00086 ATGAGCATCGGGCTTACAACCCAACTCGCTCATTCTACCGAACGACTCTATGGCCTTCTCAGCGAGACCCTCTTGCCAATAGGCCCTGATCAGGGCTCTAACCGAATCAGAAGTTATCAAAACCCCAGATTTGTGGAGAAGCTCGAGACTTTCCCAGTAGAGGGTGAACCAGTTGTTGGTGCAGAGGACTACACCGACCAAGTTGCAATAATCGTGGGTGGAGAGGGATTCGAACTTGAGCGCGACCCAGATGCAGAAACGAAGAGGAAGTTGAGGGTTCGAAGAGAGGGGTTGTTCGGAGAATGTTCGGAGGTGCGTGGGAGGCTTATGGGTTCGCCGGAATGCGGAGGAGATCTTCGCGGCTTTCGTGAACTTGGAGAAGGCCAACATTGGAGGCCTATTTCCGCTGCATCAGATTCGAATCGGTGGCTCAGTGCGTTTCACTCCCTTATAGCAACGAAGGAAAAGATGGGTGAGGGAGAGAAATTTCAGTTGGGGACGGTTGGGGCGTTGAGTCTCTCTGTGGTTTCGTCGGTGTCAATTGTGATATGTAATAAGGCACTAATGAGCACGCTGCGCTTCATTTTCGCTACAACTTTGACAAGTTGGCATCTGCTTGTAACATTTTGTTCGCTTCATGTGGCATTAAAAATGAGATTTTTTGAGCACAAACCTTTTGATCAGAAAGCTGTAATGGGGTTTGGAATTCTAAATGGAATCTCGATTGGACTTTTAAATTTGAGCCTAGGCTTCAATTCTGTTGGCTTCTATCAGATGACTAAGTTGGCAATCATCCCGTGTACTATTCTGTTGGAGATCCTTTTTCTTGGGAAAAAATTCAGTAAAAGAATACAGTTATCCCTTGCCATCCTCCTTCTAGGTGTTGGAATTGCAACAGTCACTGATTTGCAGCTCAATGCTTTAGGCTCTTTCTTATCTTTGCTAGCTGTGATTACAACATGTGTTGCTCAGATTATGACAAATACCATTCAGAAGAAGTTTAAGGTTTCTTCTACCCAACTTTTGTATCAGTCATGTCCATATCAATCAGCTACCTTGTTAATCTCTGGACCATATTTGGATAAACTTCTGACCAACCTAAATGTTTTTGCTTTCAACTACACAACACAAGTGCTGACTGTAATTATTCTTTCGTGTTTGATCTCTATCGCTGTGAATTTTAGTACATTTCTTGTAATTGGAAAAACATCTCCAGTCACCTATCAAGTTCTTGGACATCTAAAGACATGTCTTGTTTTGGCTTTTGGATATATTATTGTCCATGACCCTTTCAGCTGGAGAAACATATTGGGAATTTTGGTAGCCATGGTTGGGATGATTCTATATTCCTACTCTTGTGTTCTTGAGGGTCAACAAAAAGCAATTGAAACTGCCCCACAAGTATCACAGGCAAGAGAAGGTGAATCCGAGACTCTCATCAACGTGGATAATGGAAATACAATCTTGAGCAAAAGGCCCCCAGTGTGGAGCAAAGAAAAAGACTAG 1506 0.4336 MSIGLTTQLAHSTERLYGLLSETLLPIGPDQGSNRIRSYQNPRFVEKLETFPVEGEPVVGAEDYTDQVAIIVGGEGFELERDPDAETKRKLRVRREGLFGECSEVRGRLMGSPECGGDLRGFRELGEGQHWRPISAASDSNRWLSAFHSLIATKEKMGEGEKFQLGTVGALSLSVVSSVSIVICNKALMSTLRFIFATTLTSWHLLVTFCSLHVALKMRFFEHKPFDQKAVMGFGILNGISIGLLNLSLGFNSVGFYQMTKLAIIPCTILLEILFLGKKFSKRIQLSLAILLLGVGIATVTDLQLNALGSFLSLLAVITTCVAQIMTNTIQKKFKVSSTQLLYQSCPYQSATLLISGPYLDKLLTNLNVFAFNYTTQVLTVIILSCLISIAVNFSTFLVIGKTSPVTYQVLGHLKTCLVLAFGYIIVHDPFSWRNILGILVAMVGMILYSYSCVLEGQQKAIETAPQVSQAREGESETLINVDNGNTILSKRPPVWSKEKD 501
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca03g00086 501 PANTHER NUCLEOTIDE/SUGAR TRANSPORTER FAMILY PROTEIN 158 479 - -
Cca03g00086 501 PANTHER SOLUTE CARRIER FAMILY 35 158 479 - -
Cca03g00086 501 SUPERFAMILY Multidrug resistance efflux transporter EmrE 374 451 - -
Cca03g00086 501 Pfam Triose-phosphate Transporter family 177 450 IPR004853 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca03g00086 Cca-Chr3 1215603 1222813 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca03g00086 178 484 Organic Solute Cotransporters AT1G77610 25.786 8.41e-22 94.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca03g00086 K15285 - gmx:100788989 593.964