Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca03g00079 ATGGATGATAAAAAAGAAAATTTATTACCATCCCCCTCACCGAGCCAGATGTTATTAATTGATGAGGAACTTTGGCGGATGGCTGAAGAGAGGACCCAAGAGATACTATGGACAATTGAACCAAATGTACTATCTGAGGTGAACAGAAAGGATGTTATTGAATATGTTCAAAAGTTGATTGGAGGTTACCATGAATCAGAGGTCTTCGCATTGGGATCTTTCCCCCTGAAAACCTACCTTCCTGATGGAGATGTTGACTTGACAGCTCTCAGTCGTGTAGATGAAGAGGAGGATTTGGCTCAAACAGTGTGCGATTTACTTCAAAGTGGAGAAGACCCTGAATACCAAGTCCAAGATGTACAATATATACGTGCACAGGTCCCGCTAGTCAAGTGTACTATTAAAGGTATAGCTGTTGACATCTCTTTCAATCAGATGCCAGGACTCTATACTCTACGCTTCTTGGAACAGGTTGACCAACTTGTCGGAAAGAACTATATTTTCAAACGCAGTATTATCTTGATCAAAGCTTGGTGCTATTATGAGAGCCGACTTCTTGGTGGACACTTTGGCCTGTTAACAACATATGCATTAGAAATATTAGTGTTGTATATAATTAATCGTTTTCATTCATCAGTGCGTGGTCCTCTAGAGGTACTCTACATATTTTTGGACTACTACAGGTCATTTGATTGGGAGCATAATTATATTAGCATATGGGGTCCAAGAGCCTTATCCTCCCTTCCAGAAATTGTTGATATACCGGAATGTGATCGGGGTCAGTTCTTGCTCCAGAAAGAATTTCTCCAAAATTACAAGGATATGTGCTCTTCTTTTACCGCAAGGGCATCCGAGAATGTGACCCAAGAATTTTCTGTTAAGAGCATGAACATCTTGGATCCTTTAAGAGATGACAACAACGTAGGCCGCAGTGTCACAATGGCAAGTTTATATCGAATGAGATTAGCATTTTCCTATGGCTCAAAAAAGCTCAAGAAGATCCTCAAACTTCCAGGACAATACATGGGTGCAGCACTTGAGAAGTTTTTCCGCAGCACTTTGGACAGGAATGGGAAAGGACAAAGGGCAGATGTAGACATTCCTGTTTCTCCATTTGGCACTGGAAGATCAGAAGAGTCTGTCATCCGTGGAGATTGTAATAGTTACTATGGTGCCTTACAATATATTCAGAAGATTAATGCCAAGCCACCCCTGACTGAGAATTCCAGTTTTTCAATTTCACCTTCTCAGGATCATATCCCTGCACTGTCAATGCAGCAACACTGGAGCATGTTTTACCCAAGCGGCACTGAAGTATATATCCCGCCGGAACAGACACTCTATCATCCAACATACGAAGGAGGAATGTCACGGGGAACCGGCACATACATACCTGACTTGAATTATAATTGCTACTGGGATATACGCGCAAGGGCGTCTAGGCCAAGGAGATTTGTGTCTCCAAGGCACTATGAATTTCCCACACCACCTGTGAATAATCAACAAGAGGAGGAGGTTCATTCTGAGAAAGACATGAGTGGTAATTCAGATTCAAGGTCATTGGAGATCTCAAGTGAAGATTTCCCCCTTCTTTCAAACATTCCCAAGGCTACACCAGCAACACAAGCCCAAGAGTCTTCACCATTAGCCAAGGCTCATTCTGAGACAGACATGGGTGGTAGTTCAAGGTTGTCTGGACTCTCAAAGGAATACTTCCCCCTTTTTCCAGGCATTCACAAGGCTACAACACCACCAACACAAGTCCAAGATTCCCCTCCATTAGCAAAGGCTCATTCTGAGACAAACATGGGTGGTGATACTTCAAGTTTCTCTTTACTCTCAGATGAATATTTCCCCCTTCTTCCAAGCACCCACAAGGCCACACCACCAACACAAGCCCAAGAGGTTGCTCTATTAGAAAAGGTTCAATCTGAAACACAGATGGAGACTAATTCAAAGTGGTTTGAGCTCTCAAATGAGGATTTCCCCCTTCTTCCAAAGCTTCGTTCTGTGACACACATAGGTGGTAATTCAAGTTCGTTTGAGCTCTCAAAGGAAGAATTCCCCCTTCTCTCAAGCACTCGCAAGACCACCCCTTCAGAGTCTACTCAGTTAACCAAGCAAGGCAAGAGTTCCCTATCCTCTAAACTGAAAAATGTTGATTTTGGAACACTCAGTTACAAGAATTCACAAGCACTTGCAGAACCAAGTTTGTCCACAAAGGGTGAGAAAGGAGATTCTGGTGTTTCACTGTCTCAAGACACTGTGCAGGAAGTTCCGAAGGTGGCAGTAAAGATGGAAGAGGAATCTGCCGAGAGCTATGAGAAATGGATTGACAGTATTTAA 2346 0.4292 MDDKKENLLPSPSPSQMLLIDEELWRMAEERTQEILWTIEPNVLSEVNRKDVIEYVQKLIGGYHESEVFALGSFPLKTYLPDGDVDLTALSRVDEEEDLAQTVCDLLQSGEDPEYQVQDVQYIRAQVPLVKCTIKGIAVDISFNQMPGLYTLRFLEQVDQLVGKNYIFKRSIILIKAWCYYESRLLGGHFGLLTTYALEILVLYIINRFHSSVRGPLEVLYIFLDYYRSFDWEHNYISIWGPRALSSLPEIVDIPECDRGQFLLQKEFLQNYKDMCSSFTARASENVTQEFSVKSMNILDPLRDDNNVGRSVTMASLYRMRLAFSYGSKKLKKILKLPGQYMGAALEKFFRSTLDRNGKGQRADVDIPVSPFGTGRSEESVIRGDCNSYYGALQYIQKINAKPPLTENSSFSISPSQDHIPALSMQQHWSMFYPSGTEVYIPPEQTLYHPTYEGGMSRGTGTYIPDLNYNCYWDIRARASRPRRFVSPRHYEFPTPPVNNQQEEEVHSEKDMSGNSDSRSLEISSEDFPLLSNIPKATPATQAQESSPLAKAHSETDMGGSSRLSGLSKEYFPLFPGIHKATTPPTQVQDSPPLAKAHSETNMGGDTSSFSLLSDEYFPLLPSTHKATPPTQAQEVALLEKVQSETQMETNSKWFELSNEDFPLLPKLRSVTHIGGNSSSFELSKEEFPLLSSTRKTTPSESTQLTKQGKSSLSSKLKNVDFGTLSYKNSQALAEPSLSTKGEKGDSGVSLSQDTVQEVPKVAVKMEEESAESYEKWIDSI 781
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca03g00079 781 MobiDBLite consensus disorder prediction 692 711 - -
Cca03g00079 781 MobiDBLite consensus disorder prediction 578 608 - -
Cca03g00079 781 CDD NT_PAP_TUTase 48 155 - -
Cca03g00079 781 SUPERFAMILY Nucleotidyltransferase 20 184 IPR043519 -
Cca03g00079 781 PANTHER NUCLEOTIDYLTRANSFERASE DOMAIN PROTEIN 562 608 - -
Cca03g00079 781 PANTHER NUCLEOTIDYLTRANSFERASE DOMAIN PROTEIN 1 569 - -
Cca03g00079 781 PANTHER NUCLEOTIDYLTRANSFERASE DOMAIN PROTEIN 609 751 - -
Cca03g00079 781 Gene3D Beta Polymerase, domain 2 41 144 IPR043519 -
Cca03g00079 781 MobiDBLite consensus disorder prediction 734 754 - -
Cca03g00079 781 Gene3D - 145 351 - -
Cca03g00079 781 PANTHER PAP/OAS1 SUBSTRATE-BINDING DOMAIN SUPERFAMILY 1 569 - -
Cca03g00079 781 PANTHER PAP/OAS1 SUBSTRATE-BINDING DOMAIN SUPERFAMILY 609 751 - -
Cca03g00079 781 PANTHER PAP/OAS1 SUBSTRATE-BINDING DOMAIN SUPERFAMILY 562 608 - -
Cca03g00079 781 MobiDBLite consensus disorder prediction 582 608 - -
Cca03g00079 781 MobiDBLite consensus disorder prediction 538 563 - -
Cca03g00079 781 SUPERFAMILY PAP/OAS1 substrate-binding domain 168 336 - -
Cca03g00079 781 MobiDBLite consensus disorder prediction 488 522 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca03g00079 Cca-Chr3 1150069 1155002 Proximal
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca03g00079 - - ccaj:109797664 1548.49