Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca03g00078 ATGTTATTTACTCTCACTTGTGTTTGTCAACCCCTTTCGTCACTTTGTTCTTATTTTCCATATAACTCCTCTTCAATTAAGTCAGTCGGTTCTAAAGTTCCCTCCTTTACGCCGGAAGCCCGCGAGAGCGGTTATCACATCGAAAGGGGTTTGGAGTTTAGCACCGGAGACGCGTTTTTCCGGCAAGAGAGCGCCACCGGCCGAGACCTCGGCGTTCTGGCGGCGTCGCTGCACAAGAGGGACACCGGAAGGTTGCGAATTTTGGATGCGTTGTGTGGGTGCGGAATTCGGTCGCTCCGGTACCTGGCGGAGGCGGGGGCGGATTTTGTGGCGGCGAATGATGGGAACGAGGAGTATGGAAGCACCATTGTGGAGAATTTGTCGAGGGTTTCGGGGGTGGAGGATGGGAGGTGGGTGGTTACTCATTTGGAGGCTAATAGGGTTATGATGGATTATTATTTGCAGAAAAGTTTCTTTGATTTTATTGATGTGGATTCTTTTGGGAGTGACTCTTCTTTTTTGAGGTCTGCCATTTGTACTCTGAAATTGGGTGGCTTGCTCTATGTTACTTCCACTGATGGCTTCTCATCTGGTGGACACCGTCCTCACCATTCTTTAGCTGCATATGGAGCTTATGTGCGCCCTATGCCGTATTCGAATGAGGTTGGTTTGAGAATGCTTATAGGTGGGGTTGCCAGGGAGGCTGCATTGTTGGGGTATCATATCACTCCCTTGTTCTCCTACTATGCTTTTCATGGACCTGTTTTTCGAGTCTTGCTCAGATTGAACCGTGGGAAGATTCATGACAGTAGGCATTATGGTTATATTGGCTATTGCCACCAGTGTGGAAATTCCCATGAATTTTCTTGGGACCAACTTGGTCAGATCAGTTGCTCCTGCAGTACGCCAAAGGTTTCAAACTCCCTGGTGGTGTCAGGACCTCTTTGGACAGGACCTCTTCATGATGGTGCCTATCTTATGGACATGTTAAATCTGGCCAAGCAGTGGGGATGGATAGGCTGTGATGGTAAAGACAGCCTTGAAAAGCTTATAAAAGTGATGGTGGATGAAAGTGATCCCAAGTTGCCATTTGGGTATATCAAGTTGGATGAGATGGCAAGCCGTGCAAAAATCAATTCTCCACCTCTGAAGACCTTGATGAGCGCCATGCACCAGAAGGGTTATGCCGCCAGCAGGTCTCACATAGAAACAAATGCAATTAAGACAAATTGCCCCATGACAGAATGCATTAAGATTGCCAAAGAATTATTGAAGGTTTCTGTCGCTTAA 1290 0.4744 MLFTLTCVCQPLSSLCSYFPYNSSSIKSVGSKVPSFTPEARESGYHIERGLEFSTGDAFFRQESATGRDLGVLAASLHKRDTGRLRILDALCGCGIRSLRYLAEAGADFVAANDGNEEYGSTIVENLSRVSGVEDGRWVVTHLEANRVMMDYYLQKSFFDFIDVDSFGSDSSFLRSAICTLKLGGLLYVTSTDGFSSGGHRPHHSLAAYGAYVRPMPYSNEVGLRMLIGGVAREAALLGYHITPLFSYYAFHGPVFRVLLRLNRGKIHDSRHYGYIGYCHQCGNSHEFSWDQLGQISCSCSTPKVSNSLVVSGPLWTGPLHDGAYLMDMLNLAKQWGWIGCDGKDSLEKLIKVMVDESDPKLPFGYIKLDEMASRAKINSPPLKTLMSAMHQKGYAASRSHIETNAIKTNCPMTECIKIAKELLKVSVA 429
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca03g00078 429 Gene3D - 363 423 IPR042296 -
Cca03g00078 429 Gene3D Vaccinia Virus protein VP39 38 359 IPR029063 -
Cca03g00078 429 Pfam N2,N2-dimethylguanosine tRNA methyltransferase 58 419 IPR002905 GO:0003723|GO:0004809|GO:0008033
Cca03g00078 429 PANTHER N 2 ,N 2 -DIMETHYLGUANOSINE TRNA METHYLTRANSFERASE 34 424 IPR002905 GO:0003723|GO:0004809|GO:0008033
Cca03g00078 429 PANTHER TRNA (GUANINE(26)-N(2))-DIMETHYLTRANSFERASE 34 424 - -
Cca03g00078 429 ProSiteProfiles Trm1 methyltransferase domain profile. 38 420 IPR002905 GO:0003723|GO:0004809|GO:0008033
Cca03g00078 429 SUPERFAMILY S-adenosyl-L-methionine-dependent methyltransferases 41 421 IPR029063 -
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca03g00078 K00555 - gmx:100788340 784.252