Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca03g00071 ATGCTCCACAACAAGTCCTTCGTCAAGAAAACCAAAGGTGGCAAAGTCATGAAGCAAGTGCGGGAGCACTACCTGCGTGACGATATATACTGCGGCGCACCGTTTTGCACCGTTTGCGATTCCTCCGCCGCTCGCCTCAGTGCTTCGCCTTCCACCATTCTCGTCGTCGACACCAATGTCGTTCTCAACCAGATTGATTTGCTGGAGAATCCCGCGTTCGACAATGTTGTGGTGTTGTCCATCGTGCTGGAAGAGGTTAAGAACAAGAACATGTCTGTTTACAACCGTGTAAGATCTATCTGCAGCAATTCCATGAGGAAATTCTTTGTTTTCTCCAATGAATACCACAGGGATACATATGTTAAGGAAATGAGTGGGGAAACTAAAAATGATAGGAATGATCGAGCTATACGAGTGGCTACTCAGTGGTATCAGAATCATCTTGGTGGTGCAGTAAAGGTTTTGCTTATAACTAATGATAGAGAGAACAAAAGGAAGGCTTGTGAAGAGGGCATTTTTGCTGAAACAGTTGAGTCATATGTGAAGTCTTTAGACCGACCTGATTTACTGGACCTGCTTGTGCGGCCTGCATCTGAAGATGTGCACATGGAAGAGGTTGAAGATCTTAGACCATCCAAGAGGAAACTAATCTATTCTGAGCATAAGCCGATGTCTGAAATTACTTCTGGTTTACATCGTGGAATATATCATCAAGGGAAACTTCGTGTAAACCGTCATAATCCATTTGAAGCATATGTTGGGAGTGAGAGTATTGGTGATGAGATAATTATTTATGGGCGCTCAAACATGAATCGAGCATTTGATGGAGATATTGTGGCAGTTGAACTTCTGCCTCAGGACCAGTGGCAAGAAGCTTCATCTCTATCTATAGCCGGTGAAGAAGATGAGGATGTGGATGAAGATGTTCATCTAGCTCCAAATAGTGCTGATGATGCACCTAGAACTATTCCTCAGCAGGGTTCTTCTGAAAAAGTAAATGCTGCACCCAGTCGCCCTTCTGGTCGTATTGTTGGCATTATAAAGAGAAACTGGCATTCGTATTGTGGATCTTTGGACCCAATGCCTATGCCTGCAGGAAGTGGTGGTATTGCCCATGCACTGTTTGTCTCCAAAGATCGCAGAATTCCCAAGATTCGAATCCAAACCCGTCAACTTGAGAACCTTTTGGATAAGAGGATTATTGTGGCAGTTGATTCTTGGGATCGCCAATCACGATATCCATCAGGCCATTATGTGAGAACTATAGGGGAGATAGGTGATAGAGATACAGAAAGCGAGGTGGTTTTGATAGAAAATGATATAAATACACGACCATTCTCTTCACAAGTGCTGGCATGCTTGCCACCATTGCCATGGGTAGTCTCTTCTGAAGATTTGTCTAATCCAATCAGGCAGGACCTGCGTCATTTGCGTGTCTTCAGTGTGGACCCTCCAGGCTGCAAGGATATTGATGATGCACTCCACTGTCATGCTCTTCCAAATGGGAACTTTGAAGTTGGAGTTCATATTGCTGATGTGACAAATTTTGTTCATCCTGGAACCCCCCTTGATGATGAGGCTGCACAAAGGGGTACATCTGTCTACCTTGTTGAGCGGCGGATAGACATGCTTCCCAAACCACTCACTGAGGACATATGTTCTCTTCGTTCTGATGTGGAAAGGCTTGCATTCTCTGTCATATGGGAAATGACACCTGAAGCAGACATTATTTCCACGAGATACACAAAAAGTGTCATAAAATCTTCTGCAGCATTGTCTTATGTTGAAGCACAAGCGAGGATGGATGATAGTCGATTGATGGATCCAATTACTGCAGACTTGAGGAATATGAATAGTTTAGCCAAGAAAATGAGATTAAGGCGTATAGAGAGAGGAGCTTTGACTCTTGCATCTGCTGAAGTCAAATTTCAAATTGACACGGAGACTCATGACCCCCTTGATATTGGAATGTACCAGATCCGGGAGGCCAACCAAATGGTGGAGGAGTTTATGCTTGCTGCTAATGTTTCCGTTGCACAACAAATTCTTAAAACTTTCCCATTGTGCTCATTATTAAGGTTGCGTCATCCAACACCAACTAGAGAGATGCTTGAACCCTTGCTAATGACTGCTGCTGCAGTTGGCTTGCACTTGGATGTCTCGTCATCAAAAGCATTGGCTGATTCTCTTGACCATGCTGTGGGTGAGGATCCATACTTCAATAAGTTAATCCGTATACTGGCAACTAGGTGTATGAGTCAGGCGGTTTATTTCTGCAGTGGGGATCTTAGCCCTCCAGAATATCATCATTATGGGCTTGCATCTCCTTTGTATACCCATTTCACATCACCTATAAGAAGATATGCAGATGTCATTGTGCACAGGCTACTTGCTGCTTCTTTAGGAATATCCAAGTTACCGTCTGTATTTCAAGACAGACTTCAGCTCACTAATATTTCAGACAATTTAAATTATCGGCACAGGAATGAATATGCAGGGCGAGCATCTGTAGAGCTACATACTCTAATTTATTTCAGGAAGAGGCCTACAGACACGGAGGCTAGAATAGTGAAAATAAGATCTAATGGATTTTTTGTGTTTGTTCCCAAATATGGCATAGAAGGACCTGTATATCTGACAAAAGCTGAAAAGGGAAGTGGAGAATGGTTGTGGAGCCTCAGCCTAACCGGCCAAAACTTCAGCTTACTCTCATCTAGAGCGCTTCTCAAGGAAGGTTTCTCGTATTGGAAATCACTGGCATGA 2763 0.4358 MLHNKSFVKKTKGGKVMKQVREHYLRDDIYCGAPFCTVCDSSAARLSASPSTILVVDTNVVLNQIDLLENPAFDNVVVLSIVLEEVKNKNMSVYNRVRSICSNSMRKFFVFSNEYHRDTYVKEMSGETKNDRNDRAIRVATQWYQNHLGGAVKVLLITNDRENKRKACEEGIFAETVESYVKSLDRPDLLDLLVRPASEDVHMEEVEDLRPSKRKLIYSEHKPMSEITSGLHRGIYHQGKLRVNRHNPFEAYVGSESIGDEIIIYGRSNMNRAFDGDIVAVELLPQDQWQEASSLSIAGEEDEDVDEDVHLAPNSADDAPRTIPQQGSSEKVNAAPSRPSGRIVGIIKRNWHSYCGSLDPMPMPAGSGGIAHALFVSKDRRIPKIRIQTRQLENLLDKRIIVAVDSWDRQSRYPSGHYVRTIGEIGDRDTESEVVLIENDINTRPFSSQVLACLPPLPWVVSSEDLSNPIRQDLRHLRVFSVDPPGCKDIDDALHCHALPNGNFEVGVHIADVTNFVHPGTPLDDEAAQRGTSVYLVERRIDMLPKPLTEDICSLRSDVERLAFSVIWEMTPEADIISTRYTKSVIKSSAALSYVEAQARMDDSRLMDPITADLRNMNSLAKKMRLRRIERGALTLASAEVKFQIDTETHDPLDIGMYQIREANQMVEEFMLAANVSVAQQILKTFPLCSLLRLRHPTPTREMLEPLLMTAAAVGLHLDVSSSKALADSLDHAVGEDPYFNKLIRILATRCMSQAVYFCSGDLSPPEYHHYGLASPLYTHFTSPIRRYADVIVHRLLAASLGISKLPSVFQDRLQLTNISDNLNYRHRNEYAGRASVELHTLIYFRKRPTDTEARIVKIRSNGFFVFVPKYGIEGPVYLTKAEKGSGEWLWSLSLTGQNFSLLSSRALLKEGFSYWKSLA 920
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca03g00071 920 SUPERFAMILY PIN domain-like 52 186 IPR029060 -
Cca03g00071 920 CDD PIN_Rrp44-like 9 180 - -
Cca03g00071 920 SMART RNB_2 471 803 IPR001900 GO:0003723|GO:0004540
Cca03g00071 920 Gene3D - 207 312 - -
Cca03g00071 920 Pfam S1 domain 852 882 IPR033770 -
Cca03g00071 920 Gene3D - 851 902 IPR012340 -
Cca03g00071 920 PANTHER EXOSOME COMPLEX EXONUCLEASE RRP44 3 884 - -
Cca03g00071 920 SUPERFAMILY Nucleic acid-binding proteins 215 423 IPR012340 -
Cca03g00071 920 Gene3D - 351 426 - -
Cca03g00071 920 Pfam PIN domain 54 177 IPR002716 -
Cca03g00071 920 Pfam Rrp44-like cold shock domain 218 318 IPR033771 -
Cca03g00071 920 SUPERFAMILY Nucleic acid-binding proteins 851 890 IPR012340 -
Cca03g00071 920 MobiDBLite consensus disorder prediction 319 335 - -
Cca03g00071 920 Pfam Dis3-like cold-shock domain 2 (CSD2) 373 440 IPR041505 -
Cca03g00071 920 PANTHER RIBONUCLEASE 3 884 - -
Cca03g00071 920 SUPERFAMILY Nucleic acid-binding proteins 429 847 IPR012340 -
Cca03g00071 920 Gene3D - 9 192 - -
Cca03g00071 920 MobiDBLite consensus disorder prediction 293 339 - -
Cca03g00071 920 ProSitePatterns Ribonuclease II family signature. 770 794 IPR022966 -
Cca03g00071 920 SMART PIN_9 52 165 IPR002716 -
Cca03g00071 920 Pfam RNB domain 471 801 IPR001900 GO:0003723|GO:0004540
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca03g00071 Cca-Chr3 999866 1016067 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca03g00071 K12585 - gmx:100806652 1679.46