Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca02g02753 ATGCCTCACTCTGATGATCGAAGCATTGTCACCTGTGCCGCTGATGGACAGGTGAGACAAGCTCAAATTCTTGAAAATGGAGGAGTGGAAACTAAGTTTCTGGCCAAGCATCAAGGAAGGGCTCATAAGTTGGCTATTGAGCCGGGTAGCCCACATATATTTTATACCTGTGGTGAAGATGGATCAGTGCAGCATTTTGATCTGAGAACTGGGTCTGCAACTGAACTTTTTACATGCCAGCCAATCAAGGACAGATGGAATTACATGCCAGTCATCCATCTCAATGCAATTGCAATTGATCCAAGGAACCCAAATCTCTTTGCGGTTGCTGGGTCTGATGAGTATACTCGACTTTATGATATTCGCAAATATAAATGGGATGGATCAACTGATTTTGGTCAACCGACTGACTATTTTTGCCCTCCACACTTGATTGGTGATGAGCGAGTTGGAATAACAGGCTTGGCCTTTTCTGAACAAAGAGAGCTGCTTGTGTCATACAATGACGAGTTCATTTACCTGTTTACCCAAGACATGGGTTTGGGACCAAACCCTGATCCTGGGTCCCCTAAATCTATGAACAGTGATGCAAGTGAAATTGGATTTAATCATGGGTCTGTGTCATCTCCATCCACCATGGATGCTGATGAGAAAATCACCCCGCAAATTTTTAAGGGACACAGGAACTGTGAGACAGTGAAGGGTGTTAACTTTTTTGGACCTAAATGTGAGTATGTGGTGAGTGGGTCAGACTGTGGTCGGATTTTCATATGGAAAAAGAAAGGTGGTCAGCTTATTCGTGTCATGGAAGCAGATAAGCATGTTGTGAACTGCATTGAGTCTCATCCTCATACAATGGTTCTTGCAAGCAGTGGTATTGAGCATGACATCAAGATATGGACTCCAAAGGCCCTTGAGAAAGCTACTTTGCCCAAAAATATTGAGCAGAAACCGAAGGCTAGGGGCTGGATGTACCGGATAGCTTCTCCGGAAGATCTGATGTTGCAACTTTTTTCACTTCCAAGGCGAAGGGTTAGGACTGAAAGCGGTGGAGGAAACTCAGCTACAGATCGAGACCTTCTACAGTTGATATTGACATTCAATGCTAATAGTGACAGTTCTAACGATGATGAAGAAAACGATAATGATGAAGATACAATCAGCCAAGACGACTTGTTCAGTTAG 1185 0.4363 MPHSDDRSIVTCAADGQVRQAQILENGGVETKFLAKHQGRAHKLAIEPGSPHIFYTCGEDGSVQHFDLRTGSATELFTCQPIKDRWNYMPVIHLNAIAIDPRNPNLFAVAGSDEYTRLYDIRKYKWDGSTDFGQPTDYFCPPHLIGDERVGITGLAFSEQRELLVSYNDEFIYLFTQDMGLGPNPDPGSPKSMNSDASEIGFNHGSVSSPSTMDADEKITPQIFKGHRNCETVKGVNFFGPKCEYVVSGSDCGRIFIWKKKGGQLIRVMEADKHVVNCIESHPHTMVLASSGIEHDIKIWTPKALEKATLPKNIEQKPKARGWMYRIASPEDLMLQLFSLPRRRVRTESGGGNSATDRDLLQLILTFNANSDSSNDDEENDNDEDTISQDDLFS 394
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca02g02753 394 PANTHER WD REPEAT DOMAIN-CONTAINING FAMILY 1 376 IPR045151 -
Cca02g02753 394 Pfam WD domain, G-beta repeat 222 259 IPR001680 GO:0005515
Cca02g02753 394 PANTHER WD40/YVTN REPEAT-LIKE-CONTAINING DOMAIN-CONTAINING PROTEIN-RELATED 1 376 - -
Cca02g02753 394 SMART WD40_4 27 67 IPR001680 GO:0005515
Cca02g02753 394 SMART WD40_4 72 120 IPR001680 GO:0005515
Cca02g02753 394 SMART WD40_4 217 259 IPR001680 GO:0005515
Cca02g02753 394 SMART WD40_4 137 176 IPR001680 GO:0005515
Cca02g02753 394 SMART WD40_4 262 301 IPR001680 GO:0005515
Cca02g02753 394 MobiDBLite consensus disorder prediction 370 394 - -
Cca02g02753 394 Gene3D - 2 303 IPR015943 GO:0005515
Cca02g02753 394 SUPERFAMILY WD40 repeat-like 3 302 IPR036322 GO:0005515
Cca02g02753 394 MobiDBLite consensus disorder prediction 374 394 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca02g02753 Cca-Chr2 49014638 49020918 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca02g02753 K11804 - gmx:100791300 711.064
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca02g02753 02 49014638 49020918 Cca02g02753 02 49014638 49020918 ECH