Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca02g02748 ATGATCAGCCAGAAAATATCACCATCAACAAGCAGCCCAAGGAAGAACTCAAAAACACTTCATGACCTGTTTGTGCAGGAGAATCCTCACTTCACTGTCCCATCTTCTTCCCCAACTTCAGGAAATGAAGAACTTTTCTCCACTATTTCTTATTGCACCTTTGTTTTCACCTTCACTGACCCTTCAGAATCTCCTGCACAAAGAGACTCAAAGAGGCTTCAACTCACACGGCTAGTCTCTATATTGAAGTCCGCAAAGAAGCCAGTGCATGAAAAAGTTTTGCGGCCTCTAGTGGCCATGATCTCAGCCAACCTCTTCAGGCCACTCCCTCCACCTTCCAACCCTTCTACCATCTCAGACATGCCTGAAGAAGAAGACCCCATTTCAACATTTTCACCCCTATGGTCGCATCTCCAAATAGTTTACGATATTCTTCTCAAGCTTGTTAACAGCATGGACCAAAAGATACTGAGAGAGTGCATAGATCATTCTTTCCTCCGCAATCTCGTAGCACTTTTCCAGTCTGAGGATCCAAGGGAACGTGAGAGTTTGAAAAATGTGTACCACAAGATATATTCCAAGTTCATTTCTGATCGCTGCTTCATGAGGAAATCTATGACCGAGGTGCTGTTGAACTATGTGTTTGAGACAGAGAAGCATCCGGGTATTGCGGACTTGCTTGAGATATGGGGTACCATAATCAATGGCTTTACCGTGCCACTCAAGGAAGAGCACAAGTTGTTCCTCATGAGAGTGCTCATTCCTCTACACAAGACCAAAGGGATGCAAGTGTACCATAGGCAATTGGCTTACTGCGTGTCACAGTTTGTGCAGAAGGAGCCTATGCTTGGAGGAGTTGTTGTTAGAGGGATTTTGAGGTATTGGCCTGTCACAAACTGTCAAAAAGAAATCTTGCTAATTGGGGAGTTGGAAGATCTAGTGGAGAATTTAGACCCTGACCAGTATCGTAAGTTGGCCTTGCCCTTATGTACACAGATAACCAAATGCATAAACAGTTGGAATTCCCAGGTAGCCGAGCGTGCACTCTATGTATGGAACAACGAGCAGTTCGTAAAAATGGCATTAATAGGAACGGTGGAAGTGTTTACTGTCATTGTGGAAGGCATGGAAAAGAACCTGAAGTGGCATTGGAGCAAGAGCGTCAGGCAACTAACAGAAAGTGTGAAGGTGATGCTGGAAGAAATGGATCCAGATCTGTATTCCAAGGGTCTCATGGACAAGGAAGCTAAAGAATCAATGGCACATCAAGAAGATATCAAGAGAAAAAAGTTATGGGAAAGAATAGAAATGGAAGCTGCTAAGAATCAGTTTCTTTATCCACAACGTTATATACGTGTTTCAAACTGA 1368 0.4364 MISQKISPSTSSPRKNSKTLHDLFVQENPHFTVPSSSPTSGNEELFSTISYCTFVFTFTDPSESPAQRDSKRLQLTRLVSILKSAKKPVHEKVLRPLVAMISANLFRPLPPPSNPSTISDMPEEEDPISTFSPLWSHLQIVYDILLKLVNSMDQKILRECIDHSFLRNLVALFQSEDPRERESLKNVYHKIYSKFISDRCFMRKSMTEVLLNYVFETEKHPGIADLLEIWGTIINGFTVPLKEEHKLFLMRVLIPLHKTKGMQVYHRQLAYCVSQFVQKEPMLGGVVVRGILRYWPVTNCQKEILLIGELEDLVENLDPDQYRKLALPLCTQITKCINSWNSQVAERALYVWNNEQFVKMALIGTVEVFTVIVEGMEKNLKWHWSKSVRQLTESVKVMLEEMDPDLYSKGLMDKEAKESMAHQEDIKRKKLWERIEMEAAKNQFLYPQRYIRVSN 455
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca02g02748 455 Gene3D - 38 437 IPR011989 -
Cca02g02748 455 PANTHER SERINE/THREONINE PROTEIN PHOSPHATASE 2A REGULATORY SUBUNIT 4 440 - -
Cca02g02748 455 PANTHER SERINE/THREONINE PROTEIN PHOSPHATASE 2A PP2A REGULATORY SUBUNIT B 4 440 IPR002554 GO:0000159|GO:0007165|GO:0019888
Cca02g02748 455 Pfam Protein phosphatase 2A regulatory B subunit (B56 family) 35 439 IPR002554 GO:0000159|GO:0007165|GO:0019888
Cca02g02748 455 SUPERFAMILY ARM repeat 44 434 IPR016024 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca02g02748 Cca-Chr2 48977236 48978907 Transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca02g02748 K11584 - gmx:100802007 813.913
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca02g02748 02 48977236 48978907 Cca02g02748 02 48977236 48978907 ECH