Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca02g02747 ATGGACGCAGAGATTGATCACTACGCGGTGCTAGGGTTACCGTCCGGCGAAGAAGGCGCCAAGCTCACAGAGAAGGAAATCACGAAGGCCTACAAATTTAAGGCTCTCGAATTGCACCCCGACAAGAGGCCCGACGACGCCAACGCCGCCGCCAACTTCCAACAGCTCCGAACATCCTACGATGTCCTCAGAGATGACAAGGCGCGCAACTTGTTCCACGACCTATTGCGCGTCAAGCGCGAGCGAGAGCTCCGACACTCGCAGCGTGACGGAAAGCGCCGCAAGATGGTCTCCGACCTcgagcgccgcgagcgcgacgccaccgcccccgacgccgccgcgaaggagcgcgaGGAGGAGGCCAGGATCGCCAGGCAGCTCAAGGAGGAGATCGCCAGGATTCGGGCTATGCACGGGACGAAggaggcggcggtgccggagaagaagagcgccggttccggcggcggcggtggtggtggaggaggaggtggcgTGGATCAGGAGAAGGTTCTGAAGGTTTCGTGGGAGAAGGTGGGTGAGGATTATTCGGCTGATAAGTTGAGGGAGTTGTTTTCGAAGTTTGGTGAAGTGGAAGATGTTGTCATCAAAGGGAGTAAGAAGAAGGGTTCCGCGCTCGTTGTTATGGCCACTAAAGAAGGAGCTGTTGCTACAATTGGGAGTGTGATTGGTCATCTTGCTAATCCATTGCTGGTTTTACCTCTTAAACCGGCCACCGTTGCTGATACTTCAAGTGTTCCGAAGTCTGCTGAAACTGAAAGGATGAGTAATCTAGTCGGGGCTGGGCTGCAGAAAAGCAAAGATGATGCTGTCAGAATGGTAAACATAAGATTCAATTATTTGGCAAGGTCATCCTCAATTCTAATTTATAGGAGTCTGCAAAACCTTTGTCTCAATCAAAGTCTCGCATGCCTGCTTATCTGTTTGGAATTCACTGTGCTGTCTGTCACACAGCACTTAAATGGGAATGGAACTCGGATTAAGCCCGTATTCCAAGAACACACATTTGGTAAAGCTTACTCTCAACGTGCTGGACGAAGTGCTATAAAGTGCAATTGCGATACGGCAGCGACTCCATCGTGGCAGCCTCAGGAGCAAGGCTTCAAGGAGATCTGCGGCCTCCTCGAGCAGCAGATTTCGCATTCTTCCTCCGCCGATAAGGCTCAGATTTGGCAACACCTTCAGCACTACTCGCTCCTTCCCGACTTCAACAATTACCTCGCCTTCATCTTCTCCCGCGCCGAGGGGAAATCGGTGGAGGTTCGCCAGGCTGCAGGGTTGTATCTGAAGAATAACCTGAGGAGCACGTATAATACTATGCAGCCTGCATACCAACAGTATGTGAAATCAGAGTTGCTGCCGTGTCTTGGTGCAGCGGATAAGCACATAAGGTCAACGACCGGAACTATTGTCAGTGTTGTTGTTCAAATAGGAGGAGTTGCTGGGTGGCCTGAATTGTTGCATGCCCTCGTAAATTGCTTGGACAGTAATGATCTAAATCATATGGAAGGTGCAATGGATGCGTTATCCAAGATTTGTGAGGATATTCCTCAATATCTTGACGCTGATGTACCAGGGTTAGCAGAACGCCCTATTAACATATTTCTTCCCAGATTATTTCGGTTTTTCCAATCTCCTCATGCTTCATTGAGAAAGCTATCGCTAGGTTCTGTAAATCAATATATTATGTTAATGCCTTCTGCCTTGTACGTATCCATGGATCAATATCTTCAAGGTCTTTTTATTCTCTCAAATGACGCTGCTGCTGAAGTGCGGAAGTTGGTATGTGCGGCATTTGTTCAGCTAATTGAAGTTCGTCCATCATTCTTGGAGCCACATTTAAGGAATGTGATTGAATACATGTTACAAGTCAACAAGGACACAGATGATGAAGTAGCCCTTGAAGCCTGTGAATTTTGGTCTGCTTATTGTGATGCTCAACTGCCACCTGAAAACTTAAGAGAATTCTTGCCTCGTCTTATTCCAGTATTGTTGTCAAACATGGCTTATGCAGATGATGATGAATCACTTATTGAAGCAGAGGAAGATGGTTCTCAACCTGATCGAGATCAGGATCTTAAACCTCGATTTCATGTATCAAGGTTTCATGGATCAGATGAAGCAGAAGAAGACGATGATGATGTTGTTAACACATGGAATTTACGGAAATGCAGTGCAGCTGCTCTAGATATTCTTTCAAATGTGTTTGGAGATGAGATCCTTCCGACTCTTATGCCTATTGTTGAGGCTAAGTTATCTGCTGGTGGCGATGATGCTTGGAAAGATAGGGAAGCTGCTGTCTTGGCTCTTGGTGCCATAGGTGAAGGTTGCATCAATGGTCTTTATCCTCATCTGTTGGAGATTGTGGCATTTCTTATCCCTCTTCTTGATGATAAGTTTCCTCTGATACGAAGTATTTCATGCTGGACACTATCTCGATTTAGCAAATTTATTGTTCAGGGTATTGGGCATCCTAAAGGCTATGAACAATTTGATAATGTTCTTATGGGTCTTCTACGAAGAATTTTGGATGATAATAAGCGGGTACAAGAGGCTGCTTGTTCAGCTTTTGCAACTCTGGAAGAGGAGGCTGCTGAAGAGTTGGCACCTCGCTTGGAAATTATACTGAAGCACTTGATGACTGCATTTGGGAAATATCAGAGACGAAACCTCAGAATTGTATATGATGCTATTGGAACTCTAGCTGAAGCTGTTGGAGGAGAGTTAAATCAGCCTGTTTATCTTGACATTCTCATGCCACCATTAATTGAGAAGTGGCAGCAACTTTCAAATTCGGACAAAGATCTTTTTCCACTCCTGGAATGCTTCACATCTATAGCACAT 2862 0.4357 MDAEIDHYAVLGLPSGEEGAKLTEKEITKAYKFKALELHPDKRPDDANAAANFQQLRTSYDVLRDDKARNLFHDLLRVKRERELRHSQRDGKRRKMVSDLERRERDATAPDAAAKEREEEARIARQLKEEIARIRAMHGTKEAAVPEKKSAGSGGGGGGGGGGGVDQEKVLKVSWEKVGEDYSADKLRELFSKFGEVEDVVIKGSKKKGSALVVMATKEGAVATIGSVIGHLANPLLVLPLKPATVADTSSVPKSAETERMSNLVGAGLQKSKDDAVRMVNIRFNYLARSSSILIYRSLQNLCLNQSLACLLICLEFTVLSVTQHLNGNGTRIKPVFQEHTFGKAYSQRAGRSAIKCNCDTAATPSWQPQEQGFKEICGLLEQQISHSSSADKAQIWQHLQHYSLLPDFNNYLAFIFSRAEGKSVEVRQAAGLYLKNNLRSTYNTMQPAYQQYVKSELLPCLGAADKHIRSTTGTIVSVVVQIGGVAGWPELLHALVNCLDSNDLNHMEGAMDALSKICEDIPQYLDADVPGLAERPINIFLPRLFRFFQSPHASLRKLSLGSVNQYIMLMPSALYVSMDQYLQGLFILSNDAAAEVRKLVCAAFVQLIEVRPSFLEPHLRNVIEYMLQVNKDTDDEVALEACEFWSAYCDAQLPPENLREFLPRLIPVLLSNMAYADDDESLIEAEEDGSQPDRDQDLKPRFHVSRFHGSDEAEEDDDDVVNTWNLRKCSAAALDILSNVFGDEILPTLMPIVEAKLSAGGDDAWKDREAAVLALGAIGEGCINGLYPHLLEIVAFLIPLLDDKFPLIRSISCWTLSRFSKFIVQGIGHPKGYEQFDNVLMGLLRRILDDNKRVQEAACSAFATLEEEAAEELAPRLEIILKHLMTAFGKYQRRNLRIVYDAIGTLAEAVGGELNQPVYLDILMPPLIEKWQQLSNSDKDLFPLLECFTSIAH 954
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca02g02747 954 Pfam DnaJ domain 6 71 IPR001623 -
Cca02g02747 954 ProSiteProfiles Importin-beta N-terminal domain profile. 396 464 IPR001494 GO:0006886|GO:0031267
Cca02g02747 954 PANTHER IMPORTIN BETA 367 953 IPR040122 GO:0006606
Cca02g02747 954 CDD DnaJ 6 65 IPR001623 -
Cca02g02747 954 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 179 224 IPR000504 GO:0003723
Cca02g02747 954 Gene3D - 163 251 IPR012677 -
Cca02g02747 954 SUPERFAMILY ARM repeat 367 953 IPR016024 -
Cca02g02747 954 Gene3D - 364 954 IPR011989 -
Cca02g02747 954 PANTHER TRANSPORTIN 1 ISOFORM 1 367 953 - -
Cca02g02747 954 SUPERFAMILY Chaperone J-domain 4 73 IPR036869 -
Cca02g02747 954 MobiDBLite consensus disorder prediction 84 121 - -
Cca02g02747 954 ProSitePatterns Nt-dnaJ domain signature. 53 72 IPR018253 -
Cca02g02747 954 SUPERFAMILY RNA-binding domain, RBD 179 224 IPR035979 GO:0003676
Cca02g02747 954 SMART IBN_N_2 396 464 IPR001494 GO:0006886|GO:0031267
Cca02g02747 954 Pfam Importin-beta N-terminal domain 397 463 IPR001494 GO:0006886|GO:0031267
Cca02g02747 954 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 171 251 IPR000504 GO:0003723
Cca02g02747 954 Gene3D DnaJ domain 1 100 IPR036869 -
Cca02g02747 954 ProSiteProfiles dnaJ domain profile. 6 76 IPR001623 -
Cca02g02747 954 MobiDBLite consensus disorder prediction 139 166 - -
Cca02g02747 954 CDD RRM_DNAJC17 169 241 IPR034254 -
Cca02g02747 954 SMART dnaj_3 5 68 IPR001623 -
Cca02g02747 954 Coils Coil 117 137 - -
Cca02g02747 954 Pfam HEAT-like repeat 766 819 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca02g02747 Cca-Chr2 48953009 48969704 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca02g02747 5 122 Miscellaneous Gene Families AT1G16680 28.814 1.58e-06 50.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca02g02747 K18752 - gmx:100792702 1129.78
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca02g02747 02 48953009 48969704 Cca02g02747 02 48953009 48969704 ECH