Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca02g02735 ATGGCTTCATCATCATCAAAGAAAATTAGTGTGAAGTGCTCTGAAGGCATGGTGTTGGAGGTGGATGAAACTTTGGTGAATGTTTCTCCTACCATGAAACGCTTGATAGAAGAAAAGTGTAATGAAAGTAGCATTGTCATCACCTTGCCAAACATCTCGAGCGAAACCTTGTCTAAGATCATTGAATTCATCAAGCTTGACTTGGAAAGTGATGTGACTCTCAATAATGTCGGAGTTGAATCTGCTGATGCTGATTGTAAGGCCTCTGAGAGTCTTACAAGTTTCAATAACTTAAAACTAGAGTTCACAAAAATTGATGTAGACACACTTCTCCACCTTATTACGGCAGCACACTATCTCAAAATTGAGAAAATTTATGATTTGGGATGTGAAGAAACTGCGAGAAGAATCCGAGGAAATACCCCAGAGCAAATTCGCCAGATTTTCAAGATCAAGAATGATTTCACTCCTGAGGAAGAAGAAGAGAACAAGAGACTGTTGTTGACACCATGGTTTTTAAAATAA 525 0.3848 MASSSSKKISVKCSEGMVLEVDETLVNVSPTMKRLIEEKCNESSIVITLPNISSETLSKIIEFIKLDLESDVTLNNVGVESADADCKASESLTSFNNLKLEFTKIDVDTLLHLITAAHYLKIEKIYDLGCEETARRIRGNTPEQIRQIFKIKNDFTPEEEEENKRLLLTPWFLK 174
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca02g02735 174 Pfam Skp1 family, dimerisation domain 125 164 IPR016072 GO:0006511
Cca02g02735 174 Pfam Skp1 family, tetramerisation domain 7 65 IPR016073 GO:0006511
Cca02g02735 174 PIRSF SCF_Skp 1 166 IPR016897 GO:0006511
Cca02g02735 174 PANTHER SKP1 6 161 IPR016897 GO:0006511
Cca02g02735 174 SUPERFAMILY Skp1 dimerisation domain-like 99 164 IPR036296 GO:0006511
Cca02g02735 174 SMART skp1_3 6 122 IPR001232 GO:0006511
Cca02g02735 174 PANTHER SKP1-LIKE PROTEIN 3-RELATED 6 161 - -
Cca02g02735 174 SUPERFAMILY POZ domain 8 69 IPR011333 -
Cca02g02735 174 Gene3D Potassium Channel Kv1.1; Chain A 2 168 IPR011333 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca02g02735 Cca-Chr2 48780381 48781808 Proximal
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca02g02735 K03094 - csv:101217906 130.183
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca02g02735 02 48780381 48781808 Cca02g02735 02 48780381 48781808 ECH