Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca02g02718 ATGTTTCTCACCAGGACTGAGTATGACCGAGGAGTCAACACCTTTTCTCCCGAAGGCCGTTTGTTTCAGGTTGAATATGCAATTGAAGCCATCAAGCTGGGATCAACTGCGATTGGGTTGAAGACCAAAGAGGGTGTTGTCCTTGCTGTTGAGAAGCGCATCACTTCGCCCCTGCTGGAGCCCAGTAGTGTCGAGAAAATAATGGAAATTGATGCACACATAGGTTGTGCAATGAGCGGATTGATTGCTGATGCTCGAACACTTGTTGAACATGCACGGGTGGAAACTCAGAATCACAGGTTCTCCTATGGTGAGCCAATGACAGTTGAGTCCACAACTCAAGCTCTTTGTGATTTAGCCTTGCGTTTTGGTGAAGGTGATGAAGAATCCATGTCCCGACCATTTGGAGTATCCCTTCTCATTGCTGGCCATGATGAGAATGGACCTAGCTTATATTACACTGATCCATCTGGCACATTTTGGCAATGCACTGCAAAAGCTATTGGTTCAGGGTCAGAAGGTGCTGACAGCTCCTTGCAAGAACAGTACAACAAGGACCTAACACTTCAAGAAGCCGAGACTATAGCTTTATCCATTTTGAAGCAAGTTATGGAAGAGAAGGTCACTCCCAACAACGTTGACATTGCCAAGGTGGCTCCAACATATCATCTTTATACCCCCTCTGAGGTGGAAGCTGTGATAAGTCGTCTATGA 714 0.4622 MFLTRTEYDRGVNTFSPEGRLFQVEYAIEAIKLGSTAIGLKTKEGVVLAVEKRITSPLLEPSSVEKIMEIDAHIGCAMSGLIADARTLVEHARVETQNHRFSYGEPMTVESTTQALCDLALRFGEGDEESMSRPFGVSLLIAGHDENGPSLYYTDPSGTFWQCTAKAIGSGSEGADSSLQEQYNKDLTLQEAETIALSILKQVMEEKVTPNNVDIAKVAPTYHLYTPSEVEAVISRL 237
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca02g02718 237 PANTHER PROTEASOME SUBUNIT ALPHA TYPE 1 237 - -
Cca02g02718 237 Pfam Proteasome subunit A N-terminal signature 8 30 IPR000426 GO:0006511|GO:0019773
Cca02g02718 237 SMART Proteasome_A_N_2 8 30 IPR000426 GO:0006511|GO:0019773
Cca02g02718 237 CDD proteasome_alpha_type_5 8 218 IPR033812 GO:0019773|GO:0043161
Cca02g02718 237 ProSitePatterns Proteasome alpha-type subunits signature. 8 30 IPR000426 GO:0006511|GO:0019773
Cca02g02718 237 ProSiteProfiles Proteasome alpha-type subunit profile. 23 234 IPR023332 -
Cca02g02718 237 Gene3D Glutamine Phosphoribosylpyrophosphate, subunit 1, domain 1 1 237 IPR029055 -
Cca02g02718 237 Pfam Proteasome subunit 31 218 IPR001353 GO:0005839|GO:0051603
Cca02g02718 237 PANTHER PROTEASOME SUBUNIT ALPHA/BETA 1 237 - -
Cca02g02718 237 SUPERFAMILY N-terminal nucleophile aminohydrolases (Ntn hydrolases) 7 234 IPR029055 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca02g02718 Cca-Chr2 48585448 48590983 Transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca02g02718 K02729 - tcc:18596311 462.611
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca02g02718 02 48585448 48590983 Cca02g02718 02 48585448 48590983 ECH